barSeed - Barley Seed Development Database

Probe CUST_25129_PI390587928

Source Contig U35_38641

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25129_PI390587928	Hv_44K_v2	TGCTGCATCATTTTACCATGCTGCTGAAGATTGTCTATATATTGTGGATTCGGAGAATCA	414	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17300.2	2758	2e-24	1487 - 1546	100	60 / 60	minus	None
MLOC	MLOC_17300.9	1401	2e-24	547 - 606	100	60 / 60	minus	None
MLOC	MLOC_17300.7	2908	2e-24	1439 - 1498	100	60 / 60	minus	None
MLOC	MLOC_17300.8	2391	2e-24	988 - 1047	100	60 / 60	minus	None
MLOC	MLOC_17300.4	2729	2e-24	1461 - 1520	100	60 / 60	minus	None
MLOC	MLOC_17300.1	2940	2e-24	1495 - 1554	100	60 / 60	minus	None
MLOC	MLOC_17300.3	3239	2e-24	1479 - 1538	100	60 / 60	minus	None
JLOC1	JLOC1_11944.6	2892	8e-25	1341 - 1400	100	60 / 60	plus
JLOC1	JLOC1_11944.5	2737	8e-25	1186 - 1245	100	60 / 60	plus
JLOC1	JLOC1_11944.4	2623	8e-25	1072 - 1131	100	60 / 60	plus
JLOC1	JLOC1_11944.3	2186	8e-25	635 - 694	100	60 / 60	plus
JLOC1	JLOC1_11944.2	1961	8e-25	410 - 469	100	60 / 60	plus
JLOC1	JLOC1_11944.1	1719	8e-25	168 - 227	100	60 / 60	plus
Harvest35	U35_38641	477	3e-25	415 - 474	100	60 / 60	plus

Contig Sequence (477 bp)

>U35_38641 477 Hv_44K_v2
GTTGTCAGACAAAGAATTTACCAATATGACAAATGGTGCTTGCTACTTGCTATTTGAAGG
TTCTAAGGATGATATACTCTTCGCAAAATTGGATGGGGACCCTGAGCCCATGATCAGGGG
CATGGAAGGATTTAGTGCATTGACTGCAGAACCTTCTGAAAATGTTCTAGAATCAGGAGT
TCCGTGGCAGAAAGAAGAGGTTGTCAAAGAGCCATATGTAGGTTCTCTCAGAAACTTGTT
ACTTTATCATCCAGGTGGCCTATCAGTTGATGAGGACGGTGATCGCATTTTTATCTCTGA
TAGTAACCACCATAGAATAATCATTAGCAACGGTGATGGTGTGATTTTAGACTGTATTGG
ATCTTCCCCAGGTTTTGAGGATGGTGAATTTGAATCTGCCAAGTTAATGCACCCTGCTGC
ATCATTTTACCATGCTGCTGAAGATTGTCTATATATTGTGGATTCGGAGAATCATGC

Homology of Contig U35_38641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g14412.1	734	5e-88
Arabidopsis v10	None