- Probe CUST_25128_PI390587928
- Source Contig U35_38642
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25128_PI390587928 | Hv_44K_v2 | GGTCCAATTTTCTATGTACTAATGTCATCTGTGGACATTCAGATACGCTATTTGAAATTG | 34 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.312 | 1.697 | 1.121 | 0.831 | 0.305 | 0.378 |
| Raw | 933.640 | 1897.352 | 1109.008 | 1331.312 | 166.465 | 225.299 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64825.1 | 1603 | 2e-24 | 35 - 94 | 100 | 60 / 60 | plus | ABC39883 |
| MLOC | MLOC_64826.1 | 582 | 2e-24 | 33 - 92 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_64825.2 | 1688 | 2e-24 | 35 - 94 | 100 | 60 / 60 | plus | ABC39883 |
| Harvest35 | U35_38642 | 138 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus |
Contig Sequence (138 bp)
>U35_38642 138 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGTAGAATTACAATTTACAATTTCAAATAGCGTATCTGAATGT CCACAGATGACATTAGTACATAGAAAATTGGACCAATAAAACTGCAAAAACGAAAGATTC TACCTGGGNGGTGGGGGG
Homology of Contig U35_38642 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |