barSeed - Barley Seed Development Database

Probe CUST_2511_PI390587928

Source Contig U35_26269

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2511_PI390587928	Hv_44K_v2	ATTATGTTTTGGGTTATTCTTGTGACCTAAGGGGCACGCTGCTGCTTGTATTAACTGGGC	552	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.262	1.610	1.091	0.836	0.400	0.385
Raw	313.406	622.008	365.018	432.704	74.809	77.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56157.1	3077	2e-24	31 - 90	100	60 / 60	minus	None
MLOC	MLOC_56157.2	3378	2e-24	31 - 90	100	60 / 60	minus	None
JLOC1	JLOC1_36300.3	2856	8e-25	2691 - 2750	100	60 / 60	plus
JLOC1	JLOC1_36300.2	3031	8e-25	2866 - 2925	100	60 / 60	plus
JLOC1	JLOC1_36300.1	2623	8e-25	2458 - 2517	100	60 / 60	plus
Harvest21	ABC25381	651	3e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_26269	651	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_26269 651 Hv_44K_v2
CATCCAGGCCACCTGGCGCCGCCACAAGCGGCGGAGGCTGGCCAGGGACCTCATGATGAG
GGAGTCCTTCTCCTCCATGAGGTCGTACGAGGATGGCGATGGCAGTGGCTCCTTCGCCGC
GCACGGCCTGTCGGCGAAGATCATGGCCGCGGCCAGGAAAGGGTCTGATGGCCACCGGGA
GCTGCCCAAGTTCAGGAAGCCTTCGGAGCCGGACTTCTCGGTGGAGCACGACGACTAGGA
AAAAGGGTTGATATACATTATTCGCCATGACGGCGATCGCTGATTGCGGACTGCGGTGCC
CTTTGCGATGATCTGTAAATATGAAGCTGAGTTGGGGCTCAGTCAGGCTCCCAGGTGACA
GAGAGACTGGCTGTTCATCTGAGGGAAATGCTCAAGCTGAATTTGGGGCAGGGTAGACTG
GCTGGCTGGCTGGCTTCTGGGGGATGGGAACGGTAGGACAGTTGCTGTAGGGTTAGCTNT
AGGATGCTCATATTGTACATCCAGATGTAATTATGTTTTTTTTAGGATGCTCATATTGTA
CATCCAGATGTAATTATGTTTTGGGTTATTCTTGTGACCTAAGGGGCACGCTGCTGCTTG
TATTAACTGGGCGATCTGATTGTGAGTGGAGTGTGTGTGTGTGCATTGGTT

Homology of Contig U35_26269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None