barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25114_PI390587928Hv_44K_v2TCATAGATGGTGTAAGGCATCTTTGTAGATGCTAAATCTAATGGCAGAGGTTCCAGCGGC657GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8381.7391.1980.7200.2510.245
Raw 505.430763.358452.976423.70652.07355.783



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36486418349e-221773 - 182710055 / 55plus None
JLOC1JLOC1_45248.116665e-221345 - 139910055 / 55plus
Harvest35U35_1469710423e-25658 - 71710060 / 60plus



Contig Sequence (1042 bp)

>U35_14697 1042 Hv_44K_v2
TTGGATATGCCGTTGCGCTCTCTGGCGTTGTCATGTACAATTATTTGAAGATGAAAGATG
TGACAGCAACTCAACTTCCAATTGATAACACTGCTGATAGAGCTACCAAGGATAAGAAGA
TTGTCAACGTATTCAAACCCGACAGTTCCATTGACAGTATTGATGAAACTGTTGTTGGAG
GTGTGGCAGTTGGAGGTCTGGCAACAGAAGCCGCAGCTGTTGACGAGGAAGCCCCATTGA
TCCCTTCATCACGCCTCTCCCATGTAACCCGGACACAAACAGGCGGTCTCAGCAGCAGAT
GACCACGGTTTTCTAAAGTTTTGAGTCGGTTGAGGTAGCAAACTTCATCCCAGATTGACC
GTCATCCTATATCTTCCTCCTGGATAGCCCGAGAACTACGAGAAGACCCTCTTTGGAAGC
TCCGCCGATCGATTGATTTGTCTTGCACGTTCCTTTTCTCCACGACATGTTTGCGACGTC
TTGCTAGTTGGCGCGGAAAGCTTTTTCAGGAGACACCTGGTGGTGAATTAGAGGAAGTAG
CAGTGATAGAATGATTGATTACTTGTTATCTGTACCTGCATTTTTTGAGGAATTTTTTCC
GGTAATCCATGTTAGATATACGACATTTCTTAACCCAGCGTATGGAAATGCTGCGGATCA
TAGATGGTGTAAGGCATCTTTGTAGATGCTAAATCTAATGGCAGAGGTTCCAGCGGCCGC
TCCAACACGGTGGCAGCGATTGAACTTGCAAAGAGGCCTGAAAACAAAGGAAAGCTCATC
GTGACTGTTCATCCAAGCGCGGGAGAGCGATACTTATCATCGGCGCTGTTCGAGGGTCTG
AGGAAGGAGGCGGAGGCTATGCAGCCAGTGCCAGTGGACTAACTTGGAGCCATATAATGC
ATACGGAATAAATTCACTGCATTACCATGTTGCAAGTGCTAGTTGTATGTGCCTCGTTCG
CAATTCCTCGGTTTGTTCCTTCATGTGGACATCGTGTTAACAACAGTTGAAATGGTTGAA
AAAGGGACTTTTACCTCTCTGG



Homology of Contig U35_14697 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None