barSeed - Barley Seed Development Database

Probe CUST_25097_PI390587928

Source Contig U35_26679

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25097_PI390587928	Hv_44K_v2	AGATCATGTCATTGTGGTGCTATGACACATGCTTTCGAGTGTGTGTACTATAACAACTTA	977	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4879.3	4164	2e-24	3281 - 3340	100	60 / 60	plus	None
MLOC	MLOC_4879.1	3082	2e-24	880 - 939	100	60 / 60	minus	None
MLOC	MLOC_4879.2	3072	2e-24	880 - 939	100	60 / 60	minus	None
JLOC1	JLOC1_3097.2	3155	8e-25	2155 - 2214	100	60 / 60	plus
JLOC1	JLOC1_3097.1	1692	8e-25	692 - 751	100	60 / 60	plus
Harvest21	ABC32941	497	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_26679	1040	3e-25	978 - 1037	100	60 / 60	plus

Contig Sequence (1040 bp)

>U35_26679 1040 Hv_44K_v2
AGGTGCTTGGGTGCGGACGGCACAAGTGCCCCGAGCGGTGCCATCGTGGCCCGTGTGACG
TGACCTGCCGGCTTGTGATAAAGAAGTCCTGCCGCTGTGGGGTTCTGAAAAAGGAGCTGC
CTTGCCACCAAGACTTGACCTGCGAAAGGAAATGTCAGCGTTCACGTGCCTGTGGACGCC
ACGCTTGTAAACGACGTTGTTGTGTTGGGGATTGCCCACCCTGCGCAGAGACTTGTGATA
GGAAGCTCAAATGTGGAAACCATAAGTGTCTCTCTCCATGCCACAGAGGCGTTTGTTCAC
CTTGTCCTTTGATGAAGACCATCTCATGCTTCTGTGGGAAAACATACTTTGAGGTTCCTT
GCGGGACCGAGAAGAATCAGAAGCCTCCCAAATGCTCAAAAAGATGCAATATAGATCGTC
TTTGCAGACACAAGCTTGATTGCCGGCCCCATAAATGCCACTATGGAGCCTGTCCCCCTT
GCAAACTGATCTGCGGGGAAGAATTTTCTTGTGGCCACAAGTGTAAAGAAAGGTGTCATG
GTTCTATTCCTCCACCGAACCCTGAGTTCACAGTTAAACCAATGAAAAAAAAAATGGAAA
AGCATATAGAGTGTACGCCTGGAACTCCATGCCCACCATGCCAAGAAGTAGTCTTGGTGC
CATGTTTTGGAGAGCATCTAGGCCAAGAACGTGCAATACCTTGCTCCAAAAGCAGGCAAT
TTCCCTGTCAGAATTTATGTGGAAACCTTCTCCACTGTGGTAACCATTATTGCACAAAGG
ATTGCCATGTGTTAGAGATTCCATCGGATCAACGTAAGGCTGATGCCATATTATCTCTCA
GTAGAAAGAACACTCTTGCCGAGCCTTGCGAAAGATGCAATCTTCCTTGTCAAAGGGCCA
GGGATCCTCCTTGTTCACATCCTTGCCCTTTGCGGTGTCATCTAAGCGATTGTCTACCTT
GCAAAGCCCTTGNTAAAAGATCATGTCATTGTGGTGCTATGACACATGCTTTCGAGTGTG
TGTACTATAACAACTTAAAT

Homology of Contig U35_26679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g06550.1	910	0.0	protein\|NF-X1-type zinc finger protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT5G05660.1	880	2e-179	\| Symbols: ATNFXL2 \| sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors \| chr5:1691113-1695464 REVERSE LENGTH=880