- Probe CUST_2508_PI390587928
- Source Contig U35_38243
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2508_PI390587928 | Hv_44K_v2 | GCACAAAGCAATGACTTTGTAATCGCAGTGATTTCCAAGAATGTAACTCTTGATTTGTTT | 447 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.434 | 0.591 | 1.967 | 2.758 | 1.294 | 0.908 |
| Raw | 135.795 | 298.012 | 848.090 | 1821.969 | 307.054 | 233.564 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36927.1 | 807 | 7e-23 | 540 - 599 | 98 | 59 / 60 | plus | ABC34129 |
| JLOC1 | JLOC1_23838.1 | 720 | 4e-23 | 540 - 599 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC34129 | 557 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | ABC34129 |
| Harvest35 | U35_38243 | 557 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus |
Contig Sequence (557 bp)
>U35_38243 557 Hv_44K_v2 GGAGCGGCTACCCACCTCCAGCGCGGATGAACCCGGAGTTCCCTGCTTCCAGCTTCCCCC CTCCAGCCAGCAGCTACCCGCCGCCACCGGAGTCCGGCTCAGAATTTGCTGTATCGCAAC CAAGATCAGTTGATCGTGCACTGCCATACATGGCGCCGATGTTTCATGACTCCGCCGTCA CTTACCCACCGGCGCCTTCCACCGGCTCTTACTACCCTCCGCCGGCGCCTTCCACCGGCT CTTACTACCCTCCGCCGGAGACACGGCACCGCGAGGAAGGGGCGAGTTCGCCGTACTACT ACCCTCAGCCTGGGACCCGCTACCCGTAGGAGGAATCTTGCAGACTGCTTTGGAATGCAT AGCAGATCACAAAGCAATACTCCAAAGACTTTGTAATCGCAGTGATTTCCAAAGATTTAG TACTGTGCTTAGTACTTCATTTATATAGCACAAAGCAATGACTTTGTAATCGCAGTGATT TCCAAGAATGTAACTCTTGATTTGTTTTATACTTTCTTCCTAGCTAAATAATTATAGTTG AAAAAAAAAAAAAAAAA
Homology of Contig U35_38243 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |