- Probe CUST_25081_PI390587928
- Source Contig U35_26682
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25081_PI390587928 | Hv_44K_v2 | CATTTGTTATCGAGCCTATACTATCACAAATTTGTAAGCTTTGTACTCACCAATATGGCT | 643 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.122 | 1.500 | 1.472 | 1.184 | 0.359 | 0.288 |
| Raw | 35.356 | 75.069 | 63.343 | 79.488 | 7.532 | 6.603 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60307.5 | 2352 | 2e-24 | 1407 - 1466 | 100 | 60 / 60 | plus | ABC29908 |
| MLOC | MLOC_60307.6 | 2368 | 2e-24 | 1427 - 1486 | 100 | 60 / 60 | plus | ABC29908 |
| MLOC | MLOC_60307.7 | 2366 | 2e-24 | 1425 - 1484 | 100 | 60 / 60 | plus | ABC29908 |
| MLOC | MLOC_60307.2 | 2270 | 2e-24 | 1716 - 1775 | 100 | 60 / 60 | plus | ABC29908 |
| MLOC | MLOC_60307.3 | 2489 | 2e-24 | 1510 - 1569 | 100 | 60 / 60 | plus | ABC29908 |
| MLOC | MLOC_60307.1 | 2593 | 2e-24 | 1650 - 1709 | 100 | 60 / 60 | plus | ABC29908 |
| JLOC1 | JLOC1_39313.1 | 2644 | 8e-25 | 1646 - 1705 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23384 | 703 | 3e-25 | 644 - 703 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26682 | 703 | 3e-25 | 644 - 703 | 100 | 60 / 60 | plus |
Contig Sequence (703 bp)
>U35_26682 703 Hv_44K_v2 TCATGATGAGCCTTGTTTCCCCTCTTCAAGAGCGCAAAGATTAGGGTCTCACTTTCATCC TAATTTGGGGAGCATTCCATGTCACGATGACCAGCAATCACGGCTCTTCTCTGTTAATAG AAGGTCAGCTGGTAGGAATATGGGCCTACAGAACAATCATGATAATGCTGTAGAACACTG CATAGATTCTTTTGATAGAAACAGTGATGAAACCTTGGAGCTACTTGATGCAGTTGGCCA TGTCATGAATGTCAGTGTGGATCAACATGGCAGTCGGTTCATTCAACAGAAACTAGAAGA AGCATCTGCTGAGGATAGGGAAAAGATCTTCCCAGAGATACTGGCCAATGTTATTGCTCT AACAACCGATGTGTTTGGTAATTATGTGATCCAGAAGTTCTTTGAGTTTGCTACAGAGGG ACAGCTTAAACAGTTAGCAGATAAACTCAATGGTCATATTAAGGCTCTAAGCGGCCAGAT GTATGGTTGCAGAGTTGTTCAAAAGGTTATTGAGGTAGTTGATATGGACACAAAGATTGA TATAGTTTCTGAGCTCATGGATTCTGTTCTGGATTGTATTGGTGATCAGAATGGCACCAT GTAATTCAGAAGTGCATTGAGTGTGTTCCTGAAGATCGCATTCCATTTGTTATCGAGCCT ATACTATCACAAATTTGTAAGCTTTGTACTCACCAATATGGCT
Homology of Contig U35_26682 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g12480.1 | 339 | 3e-57 | protein|pumilio-family RNA binding repeat containing protein, expressed |
| Brachypodium v1_2 | Bradi5g02912.1 | 765 | 1e-94 | |
| Arabidopsis v10 | None |