barSeed - Barley Seed Development Database

Probe CUST_25069_PI390587928

Source Contig U35_38661

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25069_PI390587928	Hv_44K_v2	ACAAATTTCGCATGCACGATATGGACACTTCATGACACTTGTTTGACTCCGTGGAGGTGT	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19810.1	3018	2e-24	1071 - 1130	100	60 / 60	minus	ABC13044 ABC34541
Harvest21	ABC34540	590	3e-25	408 - 467	100	60 / 60	plus
Harvest35	U35_38661	590	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_38661 590 Hv_44K_v2
ACCGCCCACAATGGTCACCACCGAGCATGTTATTCAGTTCTTCACCCTTTGGATGCTTGT
GCATGAGGTACATCTCGATTTGCTCATGGAGGATGACATCCTTTTGAAGCACATAGTCTC
GGGTCTTTACTGCGCGACCTCTGCCTATATTTTTCAGTTTCTAGGAATGGTCCTCTCCCC
TATGGACTGAATTGTTTGGAAGACTTGGGCCCCTCCGAAGGTCAAGTTCTTCGCTTGGCT
AGCGCTCCAAGATAGGATCTGGACGGCCGACAGACTGACCGACAGACTGGAGAGACGGGG
CTGGCCAAATTGCGGTTCTTGCCCCCTGTGCAGGGGTGTGCAGGAATGTGGCACTCACCT
TTTCTTCCAGTGTCATTTCACTCTCAGGTTGTGAAGACTGGTCATCCACAAATTTCGCAT
GCACGATATGGACACTTCATGACACTTGTTTGACTCCGTGGAGGTGTGGTGGGCCGGCAT
CAGCGCCAGGGGCACCGCTGACCGAAAAGCCAAGGCTTCGATCACCATGCTTGTGTCGTG
GGTCATCTGGAACGAGCGAAATGCACGTGTTTCGTCATAAGAGCGCGCCC

Homology of Contig U35_38661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None