barSeed - Barley Seed Development Database

Probe CUST_25025_PI390587928

Source Contig U35_39443

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25025_PI390587928	Hv_44K_v2	ACTGTGGGTGCCATAATGCAACTGTCATGCCCAAACATCAACTGCTTTTGAAGTGTTATT	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78825.6	3950	2e-24	2167 - 2226	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.13	2057	2e-24	270 - 329	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.5	2283	2e-24	494 - 553	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.4	2134	2e-24	464 - 523	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.1	2296	2e-24	523 - 582	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.11	2830	2e-24	1150 - 1209	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.12	2901	2e-24	1221 - 1280	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.3	2067	2e-24	381 - 440	100	60 / 60	minus	ABC16451 ABC37642
MLOC	MLOC_78825.9	1814	2e-24	133 - 192	100	60 / 60	minus	ABC16451 ABC37642
JLOC1	JLOC1_52529.5	1836	8e-25	1628 - 1687	100	60 / 60	plus
JLOC1	JLOC1_52529.4	1844	8e-25	1628 - 1687	100	60 / 60	plus
JLOC1	JLOC1_52529.1	2035	8e-25	1628 - 1687	100	60 / 60	plus
Harvest35	U35_39443	432	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (432 bp)

>U35_39443 432 Hv_44K_v2
ATTAACTATGAGATGCCTAGTTCAGTTGATACATACACACATCGCATCGGAAGAACAGGG
CGTGCAGGAAAGAAGGGACTCGCGACTTCATTCTTAACTCTGGATAACACTGATATTTTC
TTCGATCTGAAACAGATGCTTACTCAGAGCAATAGTCCCGTCCCTCCAGAACTTGCCAGG
CATGAGGCGTCAAAGTTTAAGCCAGGATCGGTTCCCGATAGACCTCCAAGAAGAAATGAC
ACCGTCTATGCATCTCACTGAAGCAATCTGCTGCAGAAGAAGCAGAGATCCTTCTTGGGT
ACAATTCAGGGCAACTTCTACTGTGTCGAGATTAGTACTTACGAGAACTGGACCTATGTA
TCTTATTGTACTGTGGGTGCCATAATGCAACTGTCATGCCCAAACATCAACTGCTTTTGA
AGTGTTATTTGC

Homology of Contig U35_39443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50090.1	737	8e-51	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi1g11180.1	735	3e-52
Arabidopsis v10	None