barSeed - Barley Seed Development Database

Probe CUST_25013_PI390587928

Source Contig U35_15496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25013_PI390587928	Hv_44K_v2	TGTCCTGGCTCCATTGAGTCCTGTATTTTGGAAAAATAATATTCGGTACACATACTCAAA	1009	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.850	1.515	1.000	1.269	0.742	0.681
Raw	2495.493	3223.592	1855.620	3703.153	762.858	753.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3279.1	1410	8e-25	1151 - 1210	100	60 / 60	plus
Harvest35	U35_15496	1118	3e-25	1010 - 1069	100	60 / 60	plus

Contig Sequence (1118 bp)

>U35_15496 1118 Hv_44K_v2
GACCCAGCGTACAGACTAGGCGAGCCGCCCCCGCTTTCCGCTCCCTCTATCCTCCACACG
CCTCGTCCCCTCTCCCCTCGCCCGCCGCCGCCGCCATGGGCAGGGGCAAGTTCAAGGGCA
AGCCAACCGGCCGCCGCAACTTCTCCACCCCGGAGGAGATCGCTTCTGGAACTTCTGGGC
GCCCACGCTCGTTTAAGAAGAATGTAGCTGAAGCAGAAGAGGAAGAGGAAGAAGTAGAAG
AATCTGAAGAGGAAGAATCCGAAGACGACAGTGAAGAGAAGAAACATAAAGGAACTGAAG
GTGTTATTCAAATCGAAAATCCAAACCTGGTGAAAGCAAAGAATATAAAAGCCAAGGAAG
CTGATCTTGGAAAGACAACTGAACTCTCGAGGCGTGAGAGGGAGGAGATCGAGAAGCAAA
AATCTCATGAGCGTTATATGAAGCTTCAGGAGCAAGGCAAAACAGAACAGGCGAAGAAAG
ATTTGGAACGTCTTGCTTTAATAAGGCAGCAAAGGGCAGATGCTGCAAAGAAACGTGAAG
AGGAGAAAGCTGCTAAAGAACAGAGGAAGACCGAAGCACGCAAATAACTGTGAAGGTTGT
GGAGGCATGAGCTGAGCTGAGCTTTGTTGGCTGGATATTTATTTCTATGCATCTTAGTAT
ATTTAAACCAGGGTCTCTATTCCATTATCTACATTTCCATAAAAGTCGTGCATTTACCTA
GTGTAAAGTAGTCCTGTCGGCGTGTCTCGCTGTAAACTTGAGCTTGGCAGGGTACAAATT
TAGTGAGAATCAGCTTATGTGAGATTTGCTTTCACTAAAAAAATGGTATGGAACATAACT
GTTGAAATTTGAAAAAAAAAAAAAAAAAATGATGTATGAGCAGCAACGTAGATGTGATGG
CAGGCGTTGTCAGCGAATGCATTGTGGGCTTCATTTATGTCATGGATGATGGGGGAAGAG
CGCTGTATGCCATCGATCGAATACATAGTTAGTCCTGTATTTTGGATGATGTCCTGGCTC
CATTGAGTCCTGTATTTTGGAAAAATAATATTCGGTACACATACTCAAAAATATGCAAAA
CAGATCATTTTTATTTGGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g54920.1	167	4e-63	protein\|heat- and acid-stable phosphoprotein, putative, expressed
Brachypodium v1_2	Bradi2g50060.1	165	1e-65
Arabidopsis v10	None