barSeed - Barley Seed Development Database

Probe CUST_25009_PI390587928

Source Contig U35_41761

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25009_PI390587928	Hv_44K_v2	TTAACATTGTGCTTCTCGCCTTTTGCAGGTGCCATATCTGCTTAACTGAATACGAGGATG	405	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369613	3288	2e-24	2760 - 2819	100	60 / 60	plus	ABC09414 ABC09415
Harvest21	ABC36941	667	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_41761	667	3e-25	406 - 465	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_41761 667 Hv_44K_v2
GTCACAATGAGCTAGCTGTTAAAATTGCCATATCAAGTTGAATTACTAGACACAGTTTGC
CCTTTGCAGACATTGCACGTTTTGCTGTTAGCGCCTGGATAAAGGGGATAGCAATGTTGT
GATAACTGATGAGTAGAAGTTCATGTACAGCATCTAGAAACCCTGAATCGTGTGGATGCT
CGGTGTTCGTCACCTGTCTTCATTCAGTCTTTGCAAATTTGTTTTGTCTAGCACCCAGGG
GTTGAGAATGATTATTTTGTACATGTCTGATATCAAATTTATAGTACACTTAAAGCTCCA
TTCTTTGAGGTCTGGGTTCTCTAGCTAAAAATATGGACGTAAAATCTATTCTTTTTCCTG
GCCTAGTCTTTTCGTTCAGAGTGGTTCTTGGGAGACGCTGAAATGTTAACATTGTGCTTC
TCGCCTTTTGCAGGTGCCATATCTGCTTAACTGAATACGAGGATGGAGATCAGATAAGAA
GTCTTCCGTGCAAACACGAGTTTCACCTGCAGTGTGTTGACAAGTGGCTTAAAGAAATAC
ACAGGTAAGGAGAGAAAAAAATAGGCCCTTCTTCTGATGCAGAAGGGCAATTTGGATCGC
CGATAACACGGGACCATTTCGCTAGCTATCTCCTAAGGTTTTGTGGCTGCTGCAGGGTTT
GCCCGTT

Homology of Contig U35_41761 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None