barSeed - Barley Seed Development Database

Probe CUST_25008_PI390587928

Source Contig U35_15499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25008_PI390587928	Hv_44K_v2	TGTCACTTTCGAGTGGTGGTTGCTTTATCTATGAAATGGGGCGAAAGCCTATTTACCAAA	2168	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.082	0.217	0.893	1.886	1.351	1.341
Raw	226.761	903.564	3410.397	11091.743	2825.347	2998.620

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3309.5	2154	4e-23	2098 - 2154	100	57 / 57	plus
JLOC1	JLOC1_3309.4	2530	4e-23	2474 - 2530	100	57 / 57	plus
JLOC1	JLOC1_3309.3	2524	4e-23	2468 - 2524	100	57 / 57	plus
JLOC1	JLOC1_3309.2	2478	4e-23	2422 - 2478	100	57 / 57	plus
JLOC1	JLOC1_3309.1	2133	4e-23	2077 - 2133	100	57 / 57	plus
Harvest21	ABC03390	2227	3e-25	2154 - 2213	100	60 / 60	plus	ABC03390
Harvest35	U35_15499	2242	3e-25	2169 - 2228	100	60 / 60	plus

Contig Sequence (2242 bp)

>U35_15499 2242 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACCTCCGAACTCAACGCCTCCACGGACCATCTCTCTCCT
CTCCCCTCCCCTCACCACCACCACCACCACCACCCCTTCTCCCTCCCTGCATTTGATTCG
TTCATATTCATCCGTCGCTTGCCCGGTCGCCACCCCGTCGATCCCTCACCCCGCCGTCCC
CGGCAGTTGCAGGTGGACTGCTAATGTCATCGATGCAGTTCAGCAGCGTGCTGCCCCTGG
AGGGCAAGGCGTGCGTTTCCCCAGTCAGGAGAGAGGGATCGGCCTGCGAGCGCCTCAAGA
TCGGGGACAGCAGCAGCATCAGGCACGAGAGAGCGTCCAGGAGGATGTGCAACGGCGGCG
CCAGGGGCCCCGCCGCCACCGGTGCGCAGTGCGTGCTCACCTCCGACGCCAGCCCGGCCG
ACACCCTTGTTCTCCGGACGTCCTTCCGGAGGAATTACGCCGATCCGAACGAGGTCGCGG
CCGTCATACTCGGCGGCGGCACCGGGACTCAGCTCTTCCCGCTCACAAGCACAAGGGCCA
CACCTGCTGTTCCTATTGGAGGATGTTACAGGCTCATCGATATTCCCATGAGCAACTGCT
TCAACAGTGGCATCAACAAGATATTCGTCATGACCCAGTTCAACTCGGCATCTCTCAATC
GCCACATTCACCGCACCTACCTCGGCGGGGGAATCAATTTCACTGATGGATCTGTTGAGG
TATTGGCCGCGACACAAATGCCTGGGGAGGCTGCTGGATGGTTCCGCGGAACAGCGGATG
CCGTCAGAAAATTTATCTGGGTGCTTGAGGACTACTATAAGCATAAATCCATAGAGCACA
TTTTGATCTTGTCGGGCGATCAGCTTTATCGCATGGATTACATGGAGCTTGTGCAGAAAC
ATGTGGATGACAATGCTGACATTACTTTATCATGTGCCCCTGTTGGAGAGAGCCGGGCAT
CTGAGTACGGGCTAGTGAAGTTCGACAGTTCAGGCCGTGTGATCCAGTTTTCTGAGAAGC
CAAAGGGCGACGATCTGGAAGCGATGAAAGTGGATACCAGTTTTCTCAATTTCGCCATAG
ACGACCCTGCTAAATATCCATACATTGCTTCGATGGGAGTTTATGTCTTCAAGAGAGATG
TTCTGCTGAACCTTCTAAAGTCAAGATACGCAGAACTACATGACTTTGGGTCTGAAATCC
TCCCGAGAGCTCTGCATGATCACAATGTACAGGCATATGTCTTCACTGACTACTGGGAGG
ACATTGGAACAATCAGATCCTTCTTCGATGCGAACATGGCCCTCTGCGAACAGCCTCCAA
AGTTTGAATTTTATGATCCAAAAACCCCCTTCTTCACTTCGCCTCGGTACTTACCGCCAA
CAAAGTCAGACAAGTGCAGGATCAAAGAAGCGATCATTTCGCACGGCTGCTTCTTGCGTG
AATGCAAAATCGAGCACTCCATCATCGGCGTTCGTTCACGCCTAAACTCCGGAAGCGAGC
TCAAGAACGCGATGATGATGGGCGCGGACTCGTACGAGACCGAGGACGAGATCTCGAGGC
TGATGTCTGAGGGCAAGGTTCCCATCGGCGTCGGGGAGAACACAAAGATCAGCAACTGCA
TCATCGACATGAACGCGAGGATAGGAAGGGACGTGGTCATCTCAAACAAGGAGGGGGTGC
AAGAAGCCGACAGGCCGGAGGAAGGGTACTACATCAGGTCCGGGATCGTGGTGATCCAGA
AGAACGCGACCATCAAGGACGGCACCGTCGTGTAGGGCGTCGCCGGGTCGGCGCGACGGG
GTTCTGCGACAACCTGTGCGCTGCGTCGGTCGTCATCATCTTCTCAAACTCCGGGACTGA
AGAAGTGATCCGGGGACGGGAGACGTTTGAAGCTTGAATGACTGAGACTGAAAGTGAAGG
CGCAGCAGAGGCAGGCAGCATTAGTAGTAAGTAGTAAGTAAGTAGCAGTGGAACAAAGTA
ATAGTCGTTCGTTTTTCCCCTGTAATAAATAAGAGGCTGTGTGTTGAGGTAAAGAAAGTG
GCAGCGAGCAAACAAACTCAAACTCCCGGGGGTTGTTGGTGTAAATAAAACTCTTTGTCT
AGACTTGTGAAATTTTCAGAAAAAAAAAAAAAAAAAAGGGTTTTCCCGCTGCCTCTGTCG
ACCGACATTGTCACTTTCGAGTGGTGGTTGCTTTATCTATGAAATGGGGCGAAAGCCTAT
TTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g50380.1	520	protein\|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g14970.2	523
Arabidopsis v10	AT1G27680.1	518	\| Symbols: APL2 \| ADPGLC-PPase large subunit \| chr1:9631630-9634450 FORWARD LENGTH=518