barSeed - Barley Seed Development Database

Probe CUST_249_PI415269222

Source Contig TA30743_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_249_PI415269222	Hv_44K_v2	TATTAGTCACATGGTTACGCTGAAACAAATGCAATCACTCTGCTTTTGTGTGGCAGTGGT	1358	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.228	0.858	3.598	1.877	0.800	0.684
Raw	5.540	41.123	142.037	116.089	18.071	16.706

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66485.3	3640	2e-24	3488 - 3547	100	60 / 60	plus	ABC01861 ABC01864
MLOC	MLOC_66485.2	4135	2e-24	4016 - 4075	100	60 / 60	plus	ABC01861 ABC01864
JLOC1	JLOC1_43816.1	1604	8e-25	1469 - 1528	100	60 / 60	plus

Contig Sequence (1418 bp)

>TA30743_4513 1418 Hv_44K_v2
CTCGCTCCCGCGCCCCCACGCAAGCGCACTCTCTCGCTCTCTAGCCGCGCAGCCGATACA
AATCGTGCGTGCCGGCGTCAGTCACGCCACGCACGGTGCGCGTCCACGCCGAGTGGAGCG
GAGCTGAGCAGAGCAGGGCTTTGCTCGACCGGCAATGGCGGGAGCCTGCTCGTGCGCCGG
CCTCCTGGCGCTGGTCGTGCTCGCGTGCATCGCCGACGCTGCGACCGCGCAGCTGCGGCA
GAACTACTACGCCACCAGCTGCCCCAGTGCCGAGTCCACCGTGCGCTCCGTCATCTCGCA
GCACGTCCAGCAGAGCTTCGCCGTCGCGCCAGGCACGCTCCGCCTCTTCTTCCACGACTG
CTTCGTCCGGGGGTGCGACGCGTCGGTGATGCTGATGGCGGCGAACGGGGACGACGAGAG
CCACAGCGGCGCGGACGCCACGCTGTCGCCCGACGCCGTGGAGGCCATCAACAAGGCCAA
GGCCGCCGTCGAGGCGCTGCCCGGGTGCGCCGGCAAGGTCTCCTGCGCCGACATCCTCGC
CATGGCCGCGCGCGACGTCGTCTCCCTGACCGGCGGGCCGAGCTACGGCGTGGAGCTGGG
ACGGCTGGACGGCAGGTCGTTCAGCAAATCCATCGTGAAGCACGTCCTCCCGGGCCCCGG
CTTCGACCTCAACCAGCTCAACGCGCTCTTCGCCACCAACGGCCTCACCCAGTTCGACAT
GATCGCGCTCTCCGGTGCGCACACGATCGGGGTGACGCACTGCGACAAGTTCGTGCGCCG
GATCTACACGTTCAAGCAGCGACTCAAGTACAACCCGCCGATGAACCTCGACTTCCTGCG
GTCGCTGCGCAAGGTGTGCCCCATGAACTACCCGCCCACGGCGTTCGCCATGCTGGACGT
GACCACGCCCAAGACCTTCGACAACGCCTACTTCGACAATCTCCGCTACCAGAAGGGCCT
GCTCGCCTCCGACCAGGTGCTCTTCACCGACCGCCGCTCCCGCCCCACCGTCAACCTCTT
CGCCGCCAACTCCACCGCCTTCTTCGACGCCTTCGTCGCCGCCATGGCCAAGCTGGGACG
GATCGGGGTCAAGACCGGCAGCGCCGGCGAGGTGCGCCGGGTCTGCACCGCCGTCAACTA
GCTTTCTATTTCGGTCGTGTGTGCGTGTGCGTGCGCGTGCGTGTGGGTTAGCCTGGGTCG
GTAGGGTCGTGAATTACTTGTGATGCAGCGCAGATGCAGGGTGTTTTTGCTCGCGTGTGT
GCGTTAGTGTGCTCATACGCTACGTTTTGTGGTGGGATTATGTTAACCATTCTTTGATCG
GGATGTGGGATGGAATGGGTCTTAACGGAAAATGGGACTATTAGTCACATGGTTACGCTG
AAACAAATGCAATCACTCTGCTTTTGTGTGGCAGTGGT

Homology of Contig TA30743_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56180.1	338	0.0	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g24650.1	343	0.0
Arabidopsis v10	AT2G18980.1	323	1e-109	Peroxidase superfamily protein \| chr2:8233419-8235294 REVERSE LENGTH=323