barSeed - Barley Seed Development Database

Probe CUST_249_PI390587928

Source Contig U35_20071

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_249_PI390587928	Hv_44K_v2	AAATTTTGCAGCTCACCAAAGCTGAGGTGGTGCATGTCGACAATGTTCTATCTGAATTGT	839	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.152	1.623	1.647	1.287	0.554	0.556
Raw	381.573	861.549	740.362	916.342	136.540	149.584

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1313.1	2259	2e-24	147 - 206	100	60 / 60	minus	ABC16838
JLOC1	JLOC1_808.2	2351	8e-25	1822 - 1881	100	60 / 60	plus
JLOC1	JLOC1_808.1	2279	8e-25	1750 - 1809	100	60 / 60	plus
Harvest21	ABC16838	1056	3e-25	262 - 321	100	60 / 60	minus	ABC16838
Harvest35	U35_20071	1175	3e-25	840 - 899	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_20071 1175 Hv_44K_v2
AAGTAACCTCACCCAGTTTTCCTACTCAAGTGTCACATCTACGTGCAACTTCTATCATGC
CAATCCCAACCCCGCTTACAATGTTTGACATGGCTTCGTTCCAGTCATCTGCGAAAATAC
AGGTGCAACCTTGTTGGCCACGTGTGCCTATGCACTCTGTCCCATTATCAGTGCAGCTGC
AACAGCATCCAATAGATGGTACAGCGGTATCACAGTATGTTGATAATGTGACAATTGACA
AGTCAGGTACAAATGATCGATTCCAGGAGTTCTCAGCATCAGATAGCAACAAGAGTTTCC
CAAATACAGCTGCCTCCCAGTCGTCGGATGTTAAACAGCCAGTCTCAAGCAGTTCAGATG
CTCGAACTGTTGAGCCTTCATTTGTCCGGATAGGTGTTATCGGCAATGAAGTCCCAAATA
GCAACCCCAAGCCTGGTCAAGTTGCCAAGATTCCCTCCAAGCCACACCAGTCTTCATTAC
CATCGGATCAACAGTTCAAACATCCAGTTAATAATAATCAGGATCGTCCGGCCAGGGTTA
CCCAAAGGACTGGAACTGTGAATGAATGGCAACGTCGGTCAGGATACCCAGGGAGAAGCT
CCGGTTCCGACAAGAAATATGGCACTGGTAGGATGAAGCAGATCTATGTCGCCAAATCAT
CATCAAGTAGCCATGCCCCATCAGGCTAAGAGCAGATATTCTTTCGGCTCAATTTTCTGT
GCATGAGATTCATGTTTTATTTGGTAATTATAGCATGTGCCCGTTATTTATTGTTGCTTC
ATTTTCGTGCATGGAGCAGTATGCCCCCTCTTTGAAGCAATATGGCGTCATGCCTGGATA
AATTTTGCAGCTCACCAAAGCTGAGGTGGTGCATGTCGACAATGTTCTATCTGAATTGTT
AGGGCAACTCGAATGCAGTCCATAAAAAGCCCCTAGTTATGGACACTTTGCCATGTAACG
TTATGCATCAAATGTCCATGGACTGGTTTGGATGGTCGAATTTCCACAAGCCGGCATCAA
ACTTGGGGTACATTTAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATAAGAAATTG
AGTGTCATTTATAGCTTATGTTATAACTTACATGTGTAATAGTTGATTAAAAGAGTGTAC
TACTACTACTTTTTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g27820.1	779	4e-68	protein\|expressed protein
Brachypodium v1_2	Bradi1g60500.2	2281	6e-65
Arabidopsis v10	None