barSeed - Barley Seed Development Database

Probe CUST_24998_PI390587928

Source Contig U35_27475

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24998_PI390587928	Hv_44K_v2	ACAAGCATTTCCTCGCCGTGTCCCAACAGCTGTGCCAGTCGCATGGCGTTATCGTCAACA	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375099	1546	2e-24	576 - 635	100	60 / 60	plus	ABC11602
Harvest35	U35_27475	745	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_27475 745 Hv_44K_v2
GCAGCTTCGTCATTACTACTAAAACAAATCTGTTACTCCCAATTCCTCTGCTTCCCACAC
CCACGTCCTAGAATGAAAGAGGCAAACCAAGGAGCCGGCGACAGAGAGTCGCGGCGCACA
GTCGTCATGTACCCTGCGCCCGGCGCGGGCCATTTGATCCCCACGGTGGAGTTTGCCAGG
CTGCTCGTGTCGCATGGCCTCGCGGTCATCGTCGTTCAGCGTGGCCTTCCGGCCGGCAAC
GCCACCGTTCCCGCCTCCTGCTCGACTTCTTCTGCTACAGCGCCGCCGATGTCGCGGCAG
AGATCGGCATCCCGACGTATTTCTTCTTCCTGGGTTGCACGGCCAGCCTTGCGGTACTGC
TCCACCTGCCCGTCATCCACGGGCAAAACGCTGTGAACTTGGGTGACCTCGGCGGCGAGC
CCGTGAAGGTGCCGGGCGTCACTCCCATACCGGCGCACGACCTCCCCGCTGCTTTCCTCG
ACCGGAGCAGCGTGAGCTACAAGCATTTCCTCGCCGTGTCCCAACAGCTGTGCCAGTCGC
ATGGCGTTATCGTCAACAGCTGCCGCTCCCTGGAGCCGCGCGCCACCGACGCCGTCGCCG
CCGGCCTCTGCGCGCCCCCGGGGCGCACGACACCGCCTTTGTTCTGCATCGGCCCGGTGG
TGAAGTCCGAGGAGGTGGCTGAGAAGCAAGGCGAAGAGTGCCTTGCGTGGCTAGACACGC
AGCCGGAGGCCAGCGTGGTGTTCCT

Homology of Contig U35_27475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53390.1	387	7e-65	protein\|glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g49120.1	486	2e-63
Arabidopsis v10	None