- Probe CUST_24977_PI390587928
- Source Contig U35_27485
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24977_PI390587928 | Hv_44K_v2 | CATGTCGCATTGACACTGAGACCGTTTGTGAATCATTATTTTTTATATCCAGCTCAAATT | 212 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.369 | 3.286 | 2.653 | 1.066 | 0.075 | 0.018 |
| Raw | 5115.243 | 20279.217 | 13609.057 | 8638.587 | 215.862 | 44.154 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375379 | 2712 | 2e-24 | 2620 - 2679 | 100 | 60 / 60 | plus | ABC12639 ABC25280 |
| MLOC | MLOC_66202.1 | 2422 | 3e-21 | 2241 - 2297 | 98 | 56 / 57 | plus | ABC12639 ABC25280 |
| JLOC1 | JLOC1_43605.1 | 2422 | 2e-21 | 2241 - 2297 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC25280 | 320 | 3e-25 | 213 - 272 | 100 | 60 / 60 | plus | ABC25280 |
| Harvest35 | U35_27485 | 320 | 3e-25 | 213 - 272 | 100 | 60 / 60 | plus |
Contig Sequence (320 bp)
>U35_27485 320 Hv_44K_v2 GCCCATGTGGTGCACAACTCATACACACCGAGTAGGACGTCGGTCATCGGCAACGTCGTC TTCATGGGGCTCCAGTCGCCAGCAAAGGGGTTCACTATCTACGTAAACAACGTTGAGGTC AAGGCAGCCCGCACCAAGTCCCTGACGACTGGAGCGTTTAGCGTCAGCGGCCTGTCGCTG GCCATTGGAAAGGAGTTCCAGATCAAGGTCGTCATGTCGCATTGACACTGAGACCGTTTG TGAATCATTATTTTTTATATCCAGCTCAAATTATTAATAAAAGTTTTGAGGAATTTGAAG TTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_27485 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |