barSeed - Barley Seed Development Database

Probe CUST_24968_PI390587928

Source Contig U35_39467

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24968_PI390587928	Hv_44K_v2	ACTCACCTGCTATCAGTTCAAGTAGGAGCAATGTAGACCTTGCGAAAATGTCATCGTCCT	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65731.1	2412	3e-21	1490 - 1549	97	58 / 60	plus	ABC21895
JLOC1	JLOC1_43272.2	2430	2e-21	1376 - 1435	97	58 / 60	plus
JLOC1	JLOC1_43272.1	2318	2e-21	1264 - 1323	97	58 / 60	plus
Harvest21	ABC35623	449	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_39467	449	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_39467 449 Hv_44K_v2
AGGGAGACAGTTGCACTTAGTCAACATGTGCCATTTGCCTGGAAGACTACAGGGTTGGTG
AAAAGATAAGGGTGCTTACTTGTGGTCACACGTTCCATGCTGCTTGTGTGGACCTGTGGC
TCACATTATGTGGGACATTCTGCCCTGTATGCAAGCGAGATGCAAATGCTGGAACGTTAA
ATCTCCCTCCATCAGAGTCCATCCCTTTGCTTTCTTCTGCTATCCCCTTACCAGCTGAAT
CGACAGCTTTGTCTTTTTTTCGGTCAATGGTAGCAGCATCTCCTGCAAGGACAATAAGCC
GACATTCTTCATGGCAGTCCATGTCCCGCACTAACTCCAATTTCAGTATCCCCCACACCC
GTAACCAGTGCAGATCTTATTCCAACTCACCTGCTATCAGTTCAAGTAGGAGCAATGTAG
ACCTTGCGAAAATGTCATCGTCCTGGTCT

Homology of Contig U35_39467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None