barSeed - Barley Seed Development Database

Probe CUST_24952_PI390587928

Source Contig U35_27496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24952_PI390587928	Hv_44K_v2	GGACGCAGAAAAATAAGTTGTAAACGGTTTGAAACTCTTATAATTGACATTTTGGTGCGC	405	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54480.1	3228	6e-24	3143 - 3201	100	59 / 59	plus	None
JLOC1	JLOC1_35065.1	3228	3e-24	3143 - 3201	100	59 / 59	plus
Harvest35	U35_27496	513	3e-25	406 - 465	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_27496 513 Hv_44K_v2
GCCGGCGACGGCGCAACAGGGCGGGGCGGCGGCCGTGGCCGGGGTCCCTGCTGTTCCAGC
GCCCCAGTATGGTGGCGTGATGATGCCCAATGGTAGCAGCGCCCAAGCTGGGAATCTAGG
TGGCGCCCCCTGGGGACCGAGATAGGAAGCAGCCTGTAAAATTTAGCTCTCTTGTTTTCT
TTGTAGCTGCCAGCGTCGGTTCTAGTTTCTTTTCCCTCTTTTAGCTTACAGATTCGTGTA
AGTATGTGTACACCCCTCCTGTACCTCCCCGAGGATGTAACTCTTTTAGTAGATGGCTGT
GGGTTGTATTTTCGCAATAAACATCATCATAGGATCTGTCGCTCTGAATCCCTTCTGTTC
GTCGGTCTGTCGCCGCCCCGTTTGAAAAATCTGGCAATAATGTCTGGACGCAGAAAAATA
AGTTGTAAACGGTTTGAAACTCTTATAATTGACATTTTGGTGCGCTTGGATTAATAATAA
TATTAGTGAACTACCCACAAAAAAAAAAAAAAA

Homology of Contig U35_27496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None