barSeed - Barley Seed Development Database

Probe CUST_24951_PI390587928

Source Contig U35_27497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24951_PI390587928	Hv_44K_v2	AATTAGGAAGCATGCTGAAGAAAGCCTCAAGCAGTTTCAGGAGCAAAACCTCCCTGGTTT	346	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11530.1	3887	2e-24	3441 - 3500	100	60 / 60	minus	ABC07846 ABC19048
JLOC1	JLOC1_7640.1	4193	8e-25	479 - 538	100	60 / 60	plus
JLOC1	JLOC1_49835.1	3892	6e-21	420 - 478	97	57 / 59	plus
Harvest35	U35_27497	500	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_19961	545	2e-21	320 - 378	97	57 / 59	plus

Contig Sequence (500 bp)

>U35_27497 500 Hv_44K_v2
TGTTGGCCGACTGGAGCACATGAACCAAAGATACCCTTTTCCTTTTCTTTCCCCCACATT
ATTTGGTTTCCTCTCCGCCGCCGCCGCCGCCGCCTCCCTACCCGCCGCCACGGCCGCCTC
CCTCGTCGTGGAATCCGCCCAACCGACGAGCTGCCTCCGTATCCGATTCGGCGAGCTACC
ACCACAACTCTTTCACGCAACCATCGCCGTCTGAGGTCCCCCGCGCCGGCCAGCTCCACC
CCGCCCCTCGCCGCCGACTACCTCCCCTTCACAGTAGGGGGCTATAAGTCGACATGTCGT
TGGATGTTACTCAAATACTTTTGAGTGCGCAATCTGCCGATGGCTCAATTAGGAAGCATG
CTGAAGAAAGCCTCAAGCAGTTTCAGGAGCAAAACCTCCCTGGTTTCTTGCTCTCTCTCT
CAAGTGAGTTGGCCACTAACGAGAAACCTGAGGAGAGCCGCAGGTCGGCTGGTTTGATCC
TTAAGATGCACTGGATGCAA

Homology of Contig U35_27497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None