barSeed - Barley Seed Development Database

Probe CUST_24933_PI390587928

Source Contig U35_39481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24933_PI390587928	Hv_44K_v2	ACCGGCTATGAGCTTCTGAAATATCACCTTTGTTCTGAAGTATAAGACGTTTGGGATATT	60	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34756.5	1649	2e-24	1553 - 1612	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
MLOC	MLOC_34756.1	1954	2e-24	1858 - 1917	100	60 / 60	plus	ABC01210 ABC04092 ABC04095
JLOC1	JLOC1_22445.5	1982	8e-25	1694 - 1753	100	60 / 60	plus
JLOC1	JLOC1_22445.4	1644	8e-25	1356 - 1415	100	60 / 60	plus
JLOC1	JLOC1_22445.3	1741	8e-25	1453 - 1512	100	60 / 60	plus
JLOC1	JLOC1_22445.2	1770	8e-25	1482 - 1541	100	60 / 60	plus
JLOC1	JLOC1_22445.1	1818	8e-25	1530 - 1589	100	60 / 60	plus
Harvest21	ABC04092	1644	3e-25	1544 - 1603	100	60 / 60	plus	ABC04092
Harvest35	U35_39481	691	3e-25	61 - 120	100	60 / 60	minus
Harvest35	U35_1500	1643	3e-25	1543 - 1602	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_39481 691 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGGCAATACGATCACGCTGATCATTCTGTTGTATATATTAAA
AATATCCCAAACGTCTTATACTTCAGAACAAAGGTGATATTTCAGAAGCTCATAGCCGGT
CCTGGTACTTGCACCACTAGAGCTCACGTAACAATGAAACATCATACGTACATGGCACAG
ATCAGGTAACGCATCACAGATTCCCTTCTGTCCGCTCCTTTATTCACTAGCTGCAACACA
CCATACACACTCAGTGACACTCTACTCTCGGTTCTGCCACGCAACTACGCTGCAGCACCA
CACAATCATGTACCTATTGAAATAAAATTTGGTAATAAAGGACAGATAGAAAGCATATCC
TGGATTAGATGTGTGTGCAGCCACATACTTTCAGCTAGATTAGACAGAACGCCGCCAGGC
TTTAAAGCCCTAGCAATTGCCTGAAAAAAGGGCTTCTCCACAAGTTCCTGGGCTGGCCCA
ATTGGATCTGATGAATCAACAATAATGGCATCGTATTTTCCTTCTGGAGAATTTCTCAAG
AACTCTACAGCATCGCCAACATGAAGTCTGACACGAGGGTCTTTATATCCAACATATAGA
CGTGGGAAAAAATCTTTACAAACATCAATAACTAGCTGATCAATCTCACATATGTCTATA
CTCTCCACTGAATCATGCTTGGCTATTTCTC

Homology of Contig U35_39481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33710.4	372	2e-67	protein\|spermidine synthase, putative, expressed
Brachypodium v1_2	Bradi1g38687.1	385	1e-69
Arabidopsis v10	AT5G53120.6	386	6e-59	\| Symbols: SPDS3 \| spermidine synthase 3 \| chr5:21535429-21537653 FORWARD LENGTH=386