- Probe CUST_24931_PI390587928
- Source Contig U35_39485
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24931_PI390587928 | Hv_44K_v2 | AAATCCGTCTAGATGGATCTTGGGTTACGCTCGCCCCCAAATTCCAGTTTAGTCTTTTTT | 127 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.870 | 0.781 | 0.732 | 0.808 | 2.566 | 4.354 |
| Raw | 1611.543 | 1705.767 | 1878.480 | 2495.617 | 3517.423 | 6714.833 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4625.1 | 4716 | 2e-24 | 658 - 717 | 100 | 60 / 60 | minus | None |
| MLOC | AK358670 | 4964 | 7e-23 | 3987 - 4046 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_2907.1 | 4779 | 8e-25 | 708 - 767 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_39485 | 541 | 3e-25 | 128 - 187 | 100 | 60 / 60 | minus |
Contig Sequence (541 bp)
>U35_39485 541 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAACACCAAGAACTTGAATTATATTCCCTCTTTCCAAAATTA CTTGTCACAAAAATGAAGGTATGTACATACTTTTAGTCCTAATACATCCTTTCAAAAAAA AGCCCGAAAAAAAGACTAAACTGGAATTTGGGGGCGAGCGTAACCCAAGATCCATCTAGA CGGATTTGTGCTCTAAGCCCCCCCTGAATACCTTTCGGGAGCTTTGTAAACTCGGATCCC CCAAAAAACGGCGGCCAAACATTGGGACAGTGCTCCCAAATCTTACAAACTTAACAAAAG CAAAATTGTTCTGAATATGTGTGGCGAGTTACTAATGAAGCCCCTCCCCTAGGAAAAAAG GCGCTATCAGCAAAACTCCCAAACATCAGTCTTGGCCTCCCATGAATCAAAAAAACAGCT AAGCAAGTTAATCCGGGATTATGAAGGCCAGAGAGAAATTAAAAACTTAACCCTTGGAAC ACCAAAGATTAAATTCGAAATTTTCAAGAACCAATCCAACCCCAAGCAACAAATGTGGAG G
Homology of Contig U35_39485 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |