barSeed - Barley Seed Development Database

Probe CUST_2492_PI390587928

Source Contig U35_40562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2492_PI390587928	Hv_44K_v2	TGCACAGCATAAGTTGTTCTCCCCAGTGAAGAATCCTAATCATGTATCAAGCAGAAATGC	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63062.3	2929	2e-24	656 - 715	100	60 / 60	plus	ABC39346
MLOC	MLOC_63062.1	3597	2e-24	1109 - 1168	100	60 / 60	plus	ABC39346
MLOC	MLOC_63062.2	3462	2e-24	955 - 1014	100	60 / 60	plus	ABC39346
JLOC1	JLOC1_41299.2	3490	8e-25	943 - 1002	100	60 / 60	plus
JLOC1	JLOC1_41299.1	3548	8e-25	1001 - 1060	100	60 / 60	plus
Harvest35	U35_40562	458	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_40562 458 Hv_44K_v2
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGATCCTGGAAGA
TGGGATGAGTATGAAGGAAAGCAGTGAGCATAGCTGCTCATCCTCTGTGATTGATGACGA
AGCTTGCGCGAGGAGAGGACCCACTGTCGTTGCGAGGCTTATGGGTCTGGACTCTATGCC
TGCGGCAAGCTCATCTGGACCCTACCCGGCCCCTTTTGCCGGGCAACATACCTTCCAAGC
TATTGCCCATGATGAGTTGATTGGCAGAAGCTATGTTGGCCTTTCTAGTCCTCATAAGAT
GCCGAGTAGTCCTATTGACCGGTTTAGAATGGAAGCCCTGCCTCCGAGATTTGCCAAGAG
GACACTTTCAGTTGCACAGCATAAGTTGTTCTCCCCAGTGAAGAATCCTAATCATGTATC
AAGCAGAAATGCTGCTGATATCATGGAGGCAGCATCTA

Homology of Contig U35_40562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None