barSeed - Barley Seed Development Database

Probe CUST_24917_PI390587928

Source Contig U35_15502

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24917_PI390587928	Hv_44K_v2	TTTCGAGTCTTGTTGTAATGTTTGGACCGTAGAAGCAGCATATATAGCTCAGAGCAGAAA	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359241	1907	6e-24	1782 - 1840	100	59 / 59	plus	ABC03301 ABC03302 ABC03303 ABC03305
MLOC	AK251253.1	1886	6e-24	1826 - 1884	100	59 / 59	plus	ABC03301 ABC03302 ABC03303 ABC03305
MLOC	MLOC_51132.1	328	6e-24	22 - 80	100	59 / 59	minus	ABC03303
JLOC1	JLOC1_32638.1	574	3e-24	271 - 329	100	59 / 59	minus
Harvest21	ABC03303	589	1e-24	37 - 95	100	59 / 59	minus	ABC03303
Harvest35	U35_15502	586	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_15502 586 Hv_44K_v2
AAATTGGAATTCGCAAGGGTGATGTCATTGAAAGCTTTAACGGAAAGCACATTTCTACTA
CAATTGAGTTGGAAAGCCTGTTGATAGACATATGCTGGGATCATTTTGATCAAGAAAAGA
AATTGAATACTGAAAAAGATGTTTCGTTGAAAATATTGGATGCTACCAAACTTTGTCTGA
GAACTAGAAACTTGACTGCAATTGTATCGGATCGCGGAGAGGACATTGTAAAAGGTGCTT
ACCCTATCACGAGGGAAGAAGCCAGTCTTATGATTCTTGATTCTTGAGCTGTGCCTGAGG
CACCTGCCCACTGCTGGCCTTCATGTATGGTTGACTATGGATGAGTCAACCGCATGCCCA
TTGCAAATTCATTTCGACACAATCTTTTCGTCGTGTATTCTTAGACAAAAACTTGAAATT
ATGGGTGTCTTTGGGCCGTAGAAGCAGCTTAAGCTTAGAGCATAACCTGCATGTTAGAGC
AGTTTAACTACTTATTTCGAGTCTTGTTGTAATGTTTGGACCGTAGAAGCAGCATATATA
GCTCAGAGCAGAAAAAAAAAAAAAAAGCTACTATTACTCCCAAAAA

Homology of Contig U35_15502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None