barSeed - Barley Seed Development Database

Probe CUST_24916_PI390587928

Source Contig U35_15503

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24916_PI390587928	Hv_44K_v2	TGGAAGTTGGTAACTAATGCGAAATGTTTGCTGCATTGCCAATTCATTCCCCTTAAAAAA	2068	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35792.1	262	9e-22	34 - 88	100	55 / 55	minus	ABC03302
JLOC1	JLOC1_23060.1	303	5e-22	35 - 89	100	55 / 55	minus
Harvest35	U35_15503	2139	3e-25	2069 - 2128	100	60 / 60	plus

Contig Sequence (2139 bp)

>U35_15503 2139 Hv_44K_v2
CAGCACAGACGGACGCACCCCTGGACGCGGACACGAGTCCCCAAAGCGTCATCCGGCCTC
TCCGGTGCGGCGGCGGCGGCGCCGGAGGTGAGAAAGATGCCGAGGGCCGTCAGGATCCGC
GGCGACGAGCTGGAGAAGACGGAGCGGGAAGCGAAGAGGCGAAACCTGACAGAGAAGGAG
AAGGAGGAGGAGGAGGAGTCGACAGCTCTCCACCCCACGAGCCCTAGATCTCCCGGCGAG
GTAGCTATTCGGACTTCCCATCCAAAGATACTGTTCGCGGTCTTCGAGCCTGATGACAGA
ACCCAGTTGGAAGCAAAACAAGATCGTGTGGTCGAATCCGTGGCGGAGGAGGAATCTTCT
TCCGAGCCACTCAGCCCTCCGATCTACGAACCCTACCTTCCTGAGGAGCTAGCTGATGAT
CCGGACATACTCCATGATTTCAAAGACGCCAAGGCCAGGTACTACAAAGAACGCAATCGT
CGAATTCGCCTCTTCACCATGGACCATCACTACTATAAAGCACCATCCTGCCTGTTCAAT
CCCCATCTCTTGCTTCCTATTCTTGAGCCCGCAAGGGATGCAGCACTTCGTACTGCTAAA
TCTGTCATCTTGCTCTCATCCTTTGTCGGGGATGACCCACTGAACAAGTGCTCTGGTTTA
TGGTTTCAAAGGGACGACCAGAGCAAGACCGCCCTTGTTTTGACGTCTGCTCAGCTCATT
CGTGAAAAGAACCCAAAGAAGCCATCAGAGTGGAGGCAGCAGTGGACAGGCAAATATCTA
CGTGACGCTGAGGTCTTTGTTCACTTCCTGGACAACACAGCTGCACCTGGCCGCCTCCTC
TATCTCCAGGAGCATTATGAATTTGCTCTCTATGAGTTTGAAGTGGACAAACCAGTTCAG
CTGCTTACTTTTACTGAGCGTGTGCGCTGTGGTCAAGATGTTTTACGACTTGGAAGAGAT
GAAAGTCTGGATCTTAGGATAAGTCATGGTATGGTGGCTCATAAGATTCCATCCCGGCAT
GAGCGATATCACTATATGTATTTTTCTCGTGATCCATCTACTCGCCTACTGCTTCAAGAT
GATGGAGGGGCCATCATTGATTTAGAAGGGAAGGTGGTGGGTCTAGTTAACAACCATATT
GTCGAGACTTTCGTACCTTCGTTCATATTGCACAGGTGCTTGGATTTCTGGAGAAGGTTC
AATTGTATGCCTCGCCTCCACCTTGGAATGGCGTTCACTTCAATCGAACATTTAGATCCT
ATCTGTATTGAGAGAATGACTCGTGATCATAACATCGAGTCCGGTCTTATTGTTGAGCAG
GTGTCTAAAGGATCGAATGCTGAGAAGATTGGAATTCGTGAGGGTGACGTTATTGAAAGC
TTTAACGGAAAGTACGTTTCTACAACAATTGAGTTGGAGCAGATGCTGATAGATATATGC
TGGGATCATTTTCATCAAGGAAAATGTTTATATGAAGAAAAAGATGTTTCAGTGAAAATA
TTTGATGCTATCAAACATCACCGGAGAACTAGAAACTTGACTGTAATTGTATCGGATCTT
GGAGAGGACATTGTGAAATGCACTTACCCTTTCATGGGTAAAGAAGCAATGTGAGTCTCT
TATGATTCTTGAGCTTGGGCCTGAGAGAGGTACTTGCCCGTTGCTGGCCTTCATGGATGA
GTCAATGGAAATAACCCTTTAATGCCAATTGCAAATTCAACTTCGGCATAGTCTTTTTGT
GTGTGCGTGTGTTCCCAGACAAAAACTTTAAATTGTGGGTGCCTTTGGACCGTAGAAGCA
GCTTAGCTTAGAGCACATAATATGTATTTTCGAGCAGAGCAGAACCTGTATGCTAAATTG
CTAATGGCTACTAACTTTGTACTAAAGTTAGTACAAAGTTCAGTCACTTAATTTGGGATG
GAGGGAGTACTTATTTTGAGTCTTGTGAAACTCACATCATATCCCTATGCAAGTGTAGCA
GCCGTGGATGATGAATTGAACCGGTTAATCATGCCAGTGCAATGTTTGGACCTTAGAAGC
AGAATAGCTGTGGATGATGAATTGAAGTTGGAAGTTGGTAACTAATGCGAAATGTTTGCT
GCATTGCCAATTCATTCCCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05330.1	545	3e-84	protein\|expressed protein
Brachypodium v1_2	Bradi2g17960.1	485	8e-163
Arabidopsis v10	None