- Probe CUST_24915_PI390587928
- Source Contig U35_15504
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_24915_PI390587928 | Hv_44K_v2 | TTCATTTGCTGGACAACACAACTACACCAGGCCAGCTCATCTATCTTCAGGAGCATTATG | 702 | GeneList: orange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.886 | 1.040 | 1.839 | 1.913 | 0.835 | 0.756 |
Raw | 97.302 | 172.436 | 279.767 | 452.622 | 71.430 | 69.362 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK359241 | 1907 | 2e-24 | 742 - 801 | 100 | 60 / 60 | plus | ABC03301 ABC03302 ABC03303 ABC03305 |
MLOC | AK251253.1 | 1886 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | ABC03301 ABC03302 ABC03303 ABC03305 |
MLOC | AK373554 | 1715 | 2e-24 | 670 - 729 | 100 | 60 / 60 | plus | ABC03303 ABC03305 |
MLOC | AK252715.1 | 4255 | 2e-24 | 670 - 729 | 100 | 60 / 60 | plus | ABC03305 |
MLOC | MLOC_50869.1 | 1158 | 2e-24 | 483 - 542 | 100 | 60 / 60 | plus | ABC03305 |
JLOC1 | JLOC1_32448.1 | 1160 | 8e-25 | 485 - 544 | 100 | 60 / 60 | plus | |
Harvest21 | ABC03305 | 1749 | 3e-25 | 745 - 804 | 100 | 60 / 60 | plus | ABC03305 |
Harvest21 | ABC03304 | 765 | 3e-25 | 703 - 762 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15505 | 1749 | 3e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15504 | 765 | 3e-25 | 703 - 762 | 100 | 60 / 60 | plus |
Contig Sequence (765 bp)
>U35_15504 765 Hv_44K_v2 TGTCGAGGGCCGTCAGGATCCGCGGCGACGAGGTGGGAAAGATGTCGAGGGCCAGGAGGA TCCGCGGCGACGAGCTGGAAACGGAGCGGGGAGCAAGGGCGAAGAAGCGAAGTCTGGCAG AGGTTCACTCCACGAGCCCTAGATCTCCCGGGCAGCTAGCTGTTCGGAGTTCCCATTCCC ACCCAGAGATACTGTTCGCGATCTTCGAGCCCGACGAAGCCCAATCCGGAGGTCGTGTGC GCGATGTGGTCGAGTCCGCCATGGAGGAATCCTCCGATCCACCCAAGCCTCCGCCCTACG AACCCTACATCCCAGACGAACTAGCTGCAGACCCGGCCATACTCGCCGCCTTCAAGCATG CCGAGGCTAAATACGAAGAAGAAGAAGTTCGTCTAGCTCACCTGTTCACTATGGATCACT ACTGGCACAAACCATCTTCCTGCTTGCGCATAGACCCTCGTCTCCTTCCCATACGGGAAC TCGCAAGAGATGCAGTACTTCTTGCTGCTAAATCTGTCATTTTGCTCTCATCCTTTCTCG AGAATCAACCGCTGAATAAATGCTGTGGCTTGTGGTTTCAAAGGGATGACCAGAGAAAAA CCGCCCTTGTTTTGACGTCTGCTCATCTCACTCGTAAAAAGGATCCCAACCAGTGGAAGG GGCAGTGGACAGGCGAATATCATCATAATGCTAAGGTCATTGTTCATTTGCTGGACAACA CAACTACACCAGGCCAGCTCATCTATCTTCAGGAGCATTATGAAT
Homology of Contig U35_15504 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | Bradi2g17960.1 | 485 | 2e-52 | |
Arabidopsis v10 | None |