- Probe CUST_24908_PI390587928
- Source Contig U35_31074
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24908_PI390587928 | Hv_44K_v2 | TGCTTTCCAGGTTTTTGTGTGACAAACAGGTGAACTATGTATGACTTGTGAATGCAATAA | 277 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.497 | 1.900 | 3.802 | 2.425 | 0.672 | 0.599 |
| Raw | 3.661 | 31.009 | 52.977 | 54.438 | 3.510 | 3.397 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68898.1 | 377 | 2e-24 | 292 - 351 | 100 | 60 / 60 | plus | ABC31218 |
| JLOC1 | JLOC1_45626.1 | 769 | 6e-21 | 717 - 769 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC31218 | 376 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus | ABC31218 |
| Harvest35 | U35_31074 | 376 | 3e-25 | 278 - 337 | 100 | 60 / 60 | plus |
Contig Sequence (376 bp)
>U35_31074 376 Hv_44K_v2 GCCGCCTCGGTGCTCATTGACTCCTCCAGCCACTTTCCACAGCTCACCGCGCCAAAGGAG TTCGTCCGGGTCATTCAGGCCATCTTGCTCGACCACTGATCAGCTACTACAACTCGCAAT AATGGATCGATTTCCATGGCGTTGTTGAATGTGAATTAAAAGTTTGCGTTGCTTAGTGTT TTTACTGCTCTAGATTCGTCCCTCAGTTATTTGCATGCATGCTTGTAGTTCTCATGAATA GTACAGTAGGAGTACATTTCTATGTCAACGCCCCTTGTGCTTTCCAGGTTTTTGTGTGAC AAACAGGTGAACTATGTATGACTTGTGAATGCAATAAAAATATTAGGGTCTTGTAATGCA AAAAAAAAAAAAAAAA
Homology of Contig U35_31074 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |