- Probe CUST_24903_PI390587928
- Source Contig U35_31079
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24903_PI390587928 | Hv_44K_v2 | CATGACTCGGTTGTTCTTTCGTGTATGTACACATGATCTTATTCATTTACATGAATGACA | 496 | GeneList: mediumpurple3 MasterList: Structural_proteins_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.819 | 4.896 | 1.237 | 0.697 | 0.345 | 0.217 |
| Raw | 226.274 | 360.654 | 80.965 | 74.882 | 11.052 | 8.383 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4856.1 | 1042 | 2e-24 | 405 - 464 | 100 | 60 / 60 | minus | ABC03588 ABC40887 |
| MLOC | AK354486 | 1529 | 7e-23 | 1451 - 1510 | 98 | 59 / 60 | plus | ABC03588 ABC40887 |
| JLOC1 | JLOC1_3078.1 | 2295 | 8e-25 | 1658 - 1717 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC31223 | 561 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03590 | 1125 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC03587 | 867 | 3e-25 | 39 - 98 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC03588 | 1004 | 8e-21 | 937 - 988 | 100 | 52 / 52 | plus | ABC03588 |
| Harvest35 | U35_31079 | 561 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_417 | 1529 | 3e-25 | 1427 - 1486 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_245 | 1458 | 3e-25 | 1391 - 1450 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_496 | 837 | 6e-22 | 770 - 826 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_381 | 1004 | 8e-21 | 937 - 988 | 100 | 52 / 52 | plus |
Contig Sequence (561 bp)
>U35_31079 561 Hv_44K_v2 CTGAGCCCAAGCCTTACCCCATGCCCAAACCTGAGCCTAAGCCTGAGCCCAAACCAGAGC CGATGCCAAAACCCGAACCAAAGCCAGAGCCCAAACCAGAGCCGATGCCAAAACCCGAAC CAAAGCCAGAGCCCAAGCCTTACCCAATGCCAAAACCAGAGCCCAAGCCTCAACCCATGC CTAAGCCAGAGCCCAAGCCTGAACCCGAACCCAAGCCGGAGCCGCCTCCGAAGGGCAAGC CACCGATGACTGACAATTGATGTGATGCTCACATATGACAGCCGAAGGAGGAGGAGATCG ACCCCGTCCGGAGCCACGATGTGCTATTTCCAGAATAAGTGGCATAGTATCCGGCTAGCG AGATAGTGATGATGCATCTTTTTTGCATTCCTTGTATTCCACCATCCCTTTTTAGTTTCT CTTGTTCCATGCACCCATGATGATTATTACTACTTTGTAATTATCATTTGCGTGCTGGTA TGTGTTCATCTGTGCACATGACTCGGTTGTTCTTTCGTGTATGTACACATGATCTTATTC ATTTACATGAATGACAAAAAA
Homology of Contig U35_31079 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |