barSeed - Barley Seed Development Database

Probe CUST_24902_PI390587928

Source Contig U35_5900

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24902_PI390587928	Hv_44K_v2	TGAAGCTTGTACAGATACAGTTACAGAGAACCGTGAGCGGAAGACAAAAACCAAACGCGT	1131	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.285	2.671	0.535	0.773	2.191	0.889
Raw	26.556	33.580	5.509	12.327	13.479	4.423

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14708	1235	3e-25	1132 - 1191	100	60 / 60	plus	ABC14708
Harvest35	U35_5900	1235	3e-25	1132 - 1191	100	60 / 60	plus
Harvest35	U35_5901	502	2e-21	69 - 127	97	57 / 59	minus

Contig Sequence (1235 bp)

>U35_5900 1235 Hv_44K_v2
CTCCCCTTTGCTTGGCGGTCGGCGGCAGCAGCAGAAGGAGAAGAGAAAGGCATGGCGATC
GTGGCGGGCCTCGTTGCGCCGGCCGCGAAACCTCTCGGGCTCTCCGGCGCGCGGCGGCAG
CACCGTGGACGATGGAGAGTTGCGGCGGCGGCGGCCGCGGCAGGGGTGGACCTCAAGGCG
CTCGGGACCGCCATCGATAAGAAGGACGGCGACGAGGCCAGGCGGGCGCTGGACCGGCTC
AAGGAGCTCGGCTGGGCCAAGCGGTGGAGCTCCCAGCCCTACATGTCCCGCCGCACGACG
TCTCTCAGGGAGCTCACCAACCTCGGGATAAAGAACGCCGAGAACCTCGCCATCCCGAGC
GTCAGGAACGATGCAGCGTTTCTGTTCACGGTCGTCGGCACCACCGGATTCCTGGCCGTC
CTTGCGGGACAGCTCCCCGGGGATTGGGGCTTCTTCGTTCCCTACTTGACCGGAAGCATT
TCGTTGGTAGTATTGGCTATTGGCAGCATCTCTCCAGGTCTTCTGCAGGTGGCAATAGGT
TCTTTCTCTGCGGTTTTCCCTGACTACCAAGAGAGGATTGCTAGGCATGAAGCGGCTCAT
TTTCTGGTTGCCTATTTAACTGGCCTACCTATCCTGGGATATTCTTTGGACATTGGTAAG
GAGCATGTTAACCTGGTTGATGACCAGCTACAGAAGCTGCTGAAGGCCTGCAGTACGACA
AGGTCGTCGGCCAATCAGCCGACCTCTTCACCCTTCAGAGATTTCTGAACAGGACTAAGC
CGCCGCTAGGCAAAGCGCAACAGCAGAACCTTACGAGATGGGCGGTACTGATCGCCGCCT
CGCTTCTGAAGAACAACAAGGCGGCTCATGACGCGCTCGTAGCCGCCATGTCGCAGAAGG
CCACCGTGTTGGGGTGCATCGAAGCGATAGAGAACGCCTCCTGATTACGGCGTGATGAAC
TTGGGCGTCCTATTGGCAACAAGAGAAAAATCAAGCACGGGAAGAAACGGCCTTCTTTTT
TTACATGCTTGTTTATATCTGTCTGAAACACAACTTTCGGTGCCTAGCTGTTTAGCGGTA
GTTGACTGAGGCGTCCCTCAACAGTCAACATGTTGACTGCTCAACGCTGACTGAAGCTTG
TACAGATACAGTTACAGAGAACCGTGAGCGGAAGACAAAAACCAAACGCGTGCACTGGAA
GTCCGCTCGAGGGTACAATTTTGTGTTCAGACGTA

Homology of Contig U35_5900 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54640.1	326	1e-128	protein\|peptidase, cysteine peptidase active site, putative, expressed
Brachypodium v1_2	Bradi5g23437.1	327	2e-130
Arabidopsis v10	AT2G21960.1	332	1e-109	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). \| chr2:9354990-9356958 FORWARD LENGTH=332