barSeed - Barley Seed Development Database

Probe CUST_24890_PI390587928

Source Contig U35_43055

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24890_PI390587928	Hv_44K_v2	GGTCTACGGAATATGGGGAACACATGCTTCTTAAATGCAACTCTTCAGTGCATCACTCAT	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54964.2	2486	2e-24	1698 - 1757	100	60 / 60	minus	ABC48409
MLOC	MLOC_54964.3	2710	2e-24	1625 - 1684	100	60 / 60	minus	ABC48409
MLOC	MLOC_54964.4	2566	2e-24	1625 - 1684	100	60 / 60	minus	ABC48409
JLOC1	JLOC1_35422.3	4865	8e-25	960 - 1019	100	60 / 60	plus
JLOC1	JLOC1_35422.2	4695	8e-25	790 - 849	100	60 / 60	plus
JLOC1	JLOC1_35422.1	4736	8e-25	831 - 890	100	60 / 60	plus
Harvest21	ABC39228	632	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_43055	632	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_43055 632 Hv_44K_v2
GATTTCCGCGGCTCCCCTCTCCTCTCCCCCATCTCGCACCAACCTGCCCGCCACCTACCC
CTGCCAAACCCTAGCCGGCGACTGCTGCCCAACTGATGGCGGACGACGGCGCCGCCGCGA
GCTTGAGCCAGCCCTCCCCCGCCCAGAGCGGCTTGGATTCAGTGGATGATGAATACATGC
CAAGTGCACCTTCTTTTCCTGATAGCCAGCAGCTCAATTCTGAGAGCATTTCTGCTATAG
TAGACGAATCAAAAAAGTTGTGTTCACCACCTTCACCTACGGGTAATGAATGTGATGTGG
AACAACTTCAGCTGGAATCTGAGGAATTATTGGATGACTCAGGTTTGCTAGATGGGGAAA
CAAAGCAGCAGTCAGAACCCCTTACCACAGATGAACCCAGTTCTGTTGATGAAATCAAAA
AATGGGGGGTGGAAACTAAGCAGCATTCACCACCCGTTCATAACACTAAGCATTGGAGCT
CAAATCGTGCTCTTGAACCTTCTGACAATGAAAATAAGCCGCTCTCCTTATTTTATTCTC
GCTTCAGACAACCCCAGACAGTGGGAGCTGGTCTACGGAATATGGGGAACACATGCTTCT
TAAATGCAACTCTTCAGTGCATCACTCATACT

Homology of Contig U35_43055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None