barSeed - Barley Seed Development Database

Probe CUST_24888_PI390587928

Source Contig U35_43056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24888_PI390587928	Hv_44K_v2	GTCGCCATTGGCTGAAAGCCTGAAGCTCATGAAATAAAGTGCTGTTGCTTTTCTTCATCG	609	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68424.4	1788	2e-24	1496 - 1555	100	60 / 60	plus	ABC20512 ABC38724
MLOC	MLOC_68424.5	1794	2e-24	1502 - 1561	100	60 / 60	plus	ABC20512 ABC38724
MLOC	MLOC_68424.1	1714	2e-24	1557 - 1616	100	60 / 60	plus	ABC20512 ABC38724
MLOC	MLOC_68424.3	1866	2e-24	1666 - 1725	100	60 / 60	plus	ABC20512 ABC38724
MLOC	MLOC_68424.6	1825	2e-24	1580 - 1639	100	60 / 60	plus	ABC20512 ABC38724
MLOC	MLOC_68424.7	1695	7e-23	1516 - 1572	100	57 / 57	plus	ABC20512 ABC38724
JLOC1	JLOC1_45270.3	1764	8e-25	1521 - 1580	100	60 / 60	plus
JLOC1	JLOC1_45270.2	1803	8e-25	1560 - 1619	100	60 / 60	plus
JLOC1	JLOC1_45270.1	1798	8e-25	1555 - 1614	100	60 / 60	plus
Harvest21	ABC39230	696	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_43056	696	3e-25	610 - 669	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_43056 696 Hv_44K_v2
CGCTGTCACGATTGATAAACAGGATTCCTTTGTCATGCCACTTTGTAGCCCTTGTCGAGG
AATGTATATATTGGATCAGGCTTTAGTAGAAGTTGATCTTTGGGTAAAGAAGGAAGGGGA
TGAATCAGATGACAAGCAACTACTTTCTGCATATGCTGATATTGAAATCCGGAATGAAAC
TGATATGATGTTTTATGAACGGATTTCTGGTGATAATTGCAATTTGGACTTGAAATATGA
AGTCCTTTCCAAAAGTGTTGAGGCTGTAATACAAGTATATGCAAAAGGTTGACCATCCTC
ACCACGTGAGGTTCACTGCTTTTAGCACCGAATATGATGACCATCCTCATCGTGGAGTTG
TGCTGTTTGACGACAAATTATTTGGGAAAGAAAAACTATTCCAGCATATTGTCGCGGTGA
AAGAAAATGAAGAGCTGGATGTCATTTTAGAAGTGGGCGATTCAATGTTCAAGTGGACAT
TTCAAGATGAATGCATCGGAGCTGTTGTTTCTCCCGATGACTCAATCTTGGACTATGGAC
AGTTCTTCGTGAGGGTGTTGTTTGCTCCAAAGGATTGTAAGTGAAGCTCAGCTCCAACAT
TCTGACAGTGTCGCCATTGGCTGAAAGCCTGAAGCTCATGAAATAAAGTGCTGTTGCTTT
TCTTCATCGNGTATAAATGAGTTACAGTTAAATTTA

Homology of Contig U35_43056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g37650.1	438	2e-51
Arabidopsis v10	None