barSeed - Barley Seed Development Database

Probe CUST_24868_PI390587928

Source Contig U35_43062

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24868_PI390587928	Hv_44K_v2	GGAGTACAAAGCTGCAATATTGGCTACAATAGTTCAAAGAGGCCATAGTAGCATGATAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63089.5	5343	2e-24	1442 - 1501	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.7	4173	2e-24	1435 - 1494	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.8	4446	2e-24	1435 - 1494	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.6	3988	2e-24	1435 - 1494	100	60 / 60	minus	ABC02562 ABC39248
MLOC	MLOC_63089.2	3598	2e-24	1442 - 1501	100	60 / 60	minus	ABC39248
MLOC	MLOC_63089.3	3736	2e-24	1442 - 1501	100	60 / 60	minus	ABC39248
JLOC1	JLOC1_41313.1	3762	8e-25	2377 - 2436	100	60 / 60	plus
JLOC1	JLOC1_41312.5	4151	8e-25	1445 - 1504	100	60 / 60	minus
JLOC1	JLOC1_41312.4	4407	8e-25	1445 - 1504	100	60 / 60	minus
JLOC1	JLOC1_41312.3	4622	8e-25	1445 - 1504	100	60 / 60	minus
JLOC1	JLOC1_41312.2	4113	8e-25	1445 - 1504	100	60 / 60	minus
JLOC1	JLOC1_41312.1	3860	8e-25	1445 - 1504	100	60 / 60	minus
Harvest21	ABC39248	628	3e-25	15 - 74	100	60 / 60	minus	ABC39248
Harvest35	U35_43062	628	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (628 bp)

>U35_43062 628 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCATGCTACTATGGCCTCTTTGAACTATTGTAGCCAATATTG
CAGCTTTGTACTCCTCTCAAGTTGGTTAGATTTAGCCGTTTATGTCAAATAATAACCATC
ATGCAGTAATGTTTTGATATAAGTTGCCAGAAAAGGATTAGAAATCATCCGGTCTCTGAT
TTCATAAGAACTATAGAAACATTAATGCACAATCTTCACTCAACCTTAGGTCTGCATCAC
TCTAATGGCAAGACTAGGTACATCTTATTTCTTATCAGAAACGGCAAGCAGGACAGGACA
CCATCAACTCTCAATTGCGACACCAGGTGCCGCAACCTTGATCATCCTCGGCTTCTTGCT
GGTTCCTGCCATGATGGTTGCTGGGAGATGCTCCTGCTCATAGGCCGAGAGATGGACTCC
AAGTGCTGCTCTCCCTGAGGGATCCAGGTTCCCCGACCACCGAGCATCCCACTCTACTGC
CTTCGCCGTGCTGCATGCGACGCTTGGCCCGCCTGGCACTGTCAGGATTGCCGAGTTCTG
GGGGGAAGAACCTCTCAAATATCATCCTGTAACAGTAGGCCTCTTTTGTAGTCGGGGTGT
TGTGTGGGTAAATGAACTTCGCATTTGA

Homology of Contig U35_43062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None