barSeed - Barley Seed Development Database

Probe CUST_24864_PI390587928

Source Contig U35_43064

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24864_PI390587928	Hv_44K_v2	ATGCTTTTTCTGAAGACACCTCTGGAATCACTAAATCAGTTGATGATTGCAGCCATCTGA	276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376061	1881	2e-24	1524 - 1583	100	60 / 60	plus	ABC39250
Harvest21	ABC39250	572	3e-25	277 - 336	100	60 / 60	minus	ABC39250
Harvest35	U35_43064	572	3e-25	277 - 336	100	60 / 60	minus

Contig Sequence (572 bp)

>U35_43064 572 Hv_44K_v2
TTTTTTTTTTTTTTTTTACCTTACATTTTATCCATAACTGACACATATTTGGTACATAAT
ATCATGCAAAAACAACTACTACTTACACTTTTCGTAGGATGCAGTTTACTACTTACATTT
AACCTCATAAATTAGATCAAATTGTCCATACATGTCATCCTGAAGTGAAATTACAACAGT
ATATACTATATGACATGTTGATACTAAAGTGAAATTACAACATTATAGACTATACAGTAT
AAGTCGAGTATTCTCCAAAGGGCCATAAGGAGCCATTCAGATGGCTGCAATCATCAACTG
ATTTAGTGATTCCAGAGGTGTCTTCAGAAAAAGCATTCCAGTTGCTCTGGAAATTTTGTT
CTAAGGAGACATACTCATCACCATAAGACTGCTCATAAACTTCTACTTGCTCAGGATAGG
AGGAAGACGAGAATATGCTTGACATGCCTCCATATTCACCAGATTCAAAAGCATGATTAT
CATACTGAGGAGTCACCTCTTGTGTGGAATCCTGATAGTATCCCAAATTCATCGACCAAG
AAGGTTGATAAGGTTCGACTGGACTGTCAGGT

Homology of Contig U35_43064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None