barSeed - Barley Seed Development Database

Probe CUST_24862_PI390587928

Source Contig U35_43065

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24862_PI390587928	Hv_44K_v2	AGATGGGACGGAAATCACGTGAAATTGTAAAACTAGATGGCAGACACTGGGAGCAGATAA	420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51044.1	11237	2e-24	7915 - 7974	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.4	10699	2e-24	6786 - 6845	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.3	11664	2e-24	7653 - 7712	100	60 / 60	plus	ABC11862
JLOC1	JLOC1_32572.3	11796	8e-25	7826 - 7885	100	60 / 60	plus
JLOC1	JLOC1_32572.1	11838	8e-25	7868 - 7927	100	60 / 60	plus
Harvest21	ABC39253	483	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_43065	483	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_43065 483 Hv_44K_v2
GCATTCTTCAGCTTTTGATTGCCAACAAGAGATTGATTCTATGCCCCAGCAATGTTGATA
ATGATCTAATGTGTTGTTTCTGCATCAATCTGATGGCACTTCTTCGTGACAAGAGATCAA
CTGCTCAAAACTTTGCGGTGGATTTACTTAAGTACCTGGTGGTGCATCGACGTCCATCTC
TTGAAGACCTGCTTGTTTGTAAGCCTAACCAAGGGCAACAAACAGACATTCTGCATGGAG
GGCTTGACAAATTGCTGACTGGCAGTACATCGTTGTTTTTTGAGTGGCTCGAGAATTCTC
AGCAAACAATTAGTAAAGTGTTAGACCAGTGTGCTTTGATAATGTGGGTTCAGTACATTA
CTGGCTCAGCAAAATTTCCTGGGGTGAGAATAAAAGGCATGGAAGTCAGGCGCAAGAAAG
AGATGGGACGGAAATCACGTGAAATTGTAAAACTAGATGGCAGACACTGGGAGCAGATAA
ATG

Homology of Contig U35_43065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53280.1	3583	3e-93	protein\|WD domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g08917.1	3567	7e-98
Arabidopsis v10	AT1G03060.1	3601	3e-72	\| Symbols: SPI \| Beige/BEACH domain ;WD domain, G-beta repeat protein \| chr1:712971-726891 REVERSE LENGTH=3601