barSeed - Barley Seed Development Database

Probe CUST_24859_PI390587928

Source Contig U35_5919

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24859_PI390587928	Hv_44K_v2	TCGCCAAACGAGAATGTTGTACAACTCCTTGGTGTACTATTTTACAGATATTTTCTCTCT	883	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	1.613	1.185	0.868	0.416	0.545
Raw	1804.540	2973.237	1907.530	2199.623	366.238	523.515

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8120.1	1188	1e-23	1009 - 1066	100	58 / 58	plus
Harvest21	ABC13473	744	3e-25	685 - 744	100	60 / 60	plus	ABC13473
Harvest35	U35_5919	943	3e-25	884 - 943	100	60 / 60	plus

Contig Sequence (943 bp)

>U35_5919 943 Hv_44K_v2
AACTTATGTGGAGATGTTTACTTGCGGCAACATATGGATGAGGAGGGCTTTGTATCCATC
CCTTTTATGTCAACTTTCAATAAGGTCCGGGAAATCACTGCTGATATTCCTAACGCCAAT
TTGCAGTATATAATTGAAACAATTCAGTCCTCATCTATACTGGAAGTGAAGGGCGACAAA
GTTAGGAGGAAAGATGATTGGGACAAATGGCTGATTCCTCGAGAGAGCAATCCTAATATT
GTGTCAAGCTCTGCAGCAGCTGTGCCAAGCCCCAATGTGAATGATCTGACAGCACACCTT
GGTGGCGTGGGCCTGCATGAACCAGCTGGCCCTAGTAGCACGGTGGACCAAAACCACCAT
GAGGTAGTCCAGAATGGATCAGCTTCTTCCAGCAATAACCCAGCACCGGCAGCTGAAGAA
AGCGCTGGTCAGCGCTAGACACACACTGTCTCCTTATATCACACTATGACTGCAAGGGTT
TTTGTCCGAGCGCGAGTGACGAGAGTAGAAATGATGATTTTTGGAAGGTGGTATGCTTGT
GGGGTTGCATTAGACTGACAAGTGGGTTTATTTTGCGGGGTTGATGTGGCTTTCTGGTTG
TTGGTGAACATCGGTCTAGTTGAAACGATAGGCGGGCAAACAAAAAGGTTTATCGTGCAG
GGGGGCATCAAACAAGAAGAGGGGGGAGAAGCTGAAGAAGAGGATGAAAGACGCTGGTTA
GGGCCTAGTTGCTTAGTATGCGATTCCCGACCGGTTATTTTGGCCATGTGGGTTAATTGA
AGTCCAAAACTCTGTCTGGTTTCTTCCCCCCCATTTGGATTGGATGTAAACCTCCATTTT
TTGACGGAGGAGGATGATGTGATGAACTTTCTTGTCAGCTGTTTCGCCAAACGAGAATGT
TGTACAACTCCTTGGTGTACTATTTTACAGATATTTTCTCTCT

Homology of Contig U35_5919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None