barSeed - Barley Seed Development Database

Probe CUST_24837_PI390587928

Source Contig U35_5926

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24837_PI390587928	Hv_44K_v2	CATCAAAGCTTGAGCTTTGTGTGCAATTTTGTTTTGTTGTGGGGCCTAAACCTTTGGGGC	1291	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.991	1.765	1.478	1.048	0.548	0.490
Raw	55.612	157.229	110.516	124.436	22.139	22.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC43239	429	3e-25	85 - 144	100	60 / 60	minus	ABC43239
Harvest35	U35_5926	1435	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1435 bp)

>U35_5926 1435 Hv_44K_v2
AAACAGCAGTTGTTGTTGGAAAAGTTGCAGTATCGAAAAACCCTTGTCTCCATCCTGGTG
ACATCAGAGTACTTGAAGCTGTCTATGACCATGGATTGTACTCTAAGAACCTGGTTGATT
GTGTTGTCTTCCCCCAAAGAGGAGAAAGGCCTCATCCTAATGAATGCTCCGGGGGCGATT
TGGACGGTGACCTCTATTTTATCACTTGGGATGAGAAACTGATTCCGGAGAAGGTTGATT
CACCTATGGACTACACTGCAGCAAGGCCACGCATAATGGATCATGTTGTTACACTTGAGG
AAATTCAGAAGTACTTTGTGGATTACATGATAAATGACTCGCTCGGTGCAATCTCAACTG
CTCACTTGGTCCATGCGGATCGTCACCCAATGAAAGCCCGGAGCCCTGAGTGCCTCCAGC
TAGCTGCTTTGCATTCAATGGCGGTCGACTTTGCCAAATCAGGAGCTCCAGCTGAAATGC
CCCGGTCACTGAGACCAAAGGAGTACCCCGACTTCATGGAACGGTGGGACAAACCAACGT
ACATCTCCAACGGACCTCTCGGCAAGCTGTACCGAGCGGCTGCGAGCCGTATGCAGAGCG
CTCCTGCCCCCTCGTCCTCGGCTCAACCGATCCCCGCGTTCGATCCTGACCTAGAGGTCC
CTGGCTTTGAGGAGTTCCTGGTATCCGCGGAGGAGTGCTACGATCTGTACGCGGAGAAGC
TGAGCACCCTGATGAGCTACTACGGCACGGAGCATGAGGACGAGATACTGACGGGCAACA
TCCGGAACAGGCTCCTGTACGGGGCTGGTTCACGAGCCGCCCGAAGGCGGAGGCGGCGAG
GAAGGCCTCGGCGTGGTACCACATGGCCTATCACCCGGACCACCACCAGCCGGGAAAGAG
GCGGTTCTGGAGCTTCCCGTGGATCATCTGCGACGAGCTGCTGACGATCAAGGAGTCCAG
TAGGCGGCACCGGCAGCAGGTGGACGGTGCGGCGGCGTGACTCATCGTCCGGCCAAGTAA
TTAAGTGGGAGTTGGCAAGAAGATGTAATAATAAGTTGTAACCGCACAGTGTGTCACAGG
CAAGCCCGTCTGGTGATTGCGCCGCTGCTATGAGTTTGTATGTAGTGTAAAACTCTGGGG
CATGACTGCAGTGCAGACCATTGTGAGCTGAGCGGCAGAGCTGTGCCTGCCTTGCTCGTG
TGGACGGACAGATTTGCTGGATGTGTGTGACTGGAAATGAACCGTGCTTGGTCGGGCTTT
GCGGGAGGTCAATCATGCTCCGTCACTGTTTCATCAAAGCTTGAGCTTTGTGTGCAATTT
TGTTTTGTTGTGGGGCCTAAACCTTTGGGGCCGTTTAACAAATAAATAAATAGAACCAGT
GACATGTTTAGACATAAACTGTTGAGCTATTTTCCATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5926 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39160.1	1137	2e-132	protein\|RNA-dependent RNA polymerase, putative, expressed
Brachypodium v1_2	Bradi5g12757.1	1141	3e-139
Arabidopsis v10	AT4G11130.1	1133	7e-104	\| Symbols: RDR2, SMD1 \| RNA-dependent RNA polymerase 2 \| chr4:6780522-6784390 FORWARD LENGTH=1133