barSeed - Barley Seed Development Database

Probe CUST_24833_PI390587928

Source Contig U35_5929

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24833_PI390587928	Hv_44K_v2	GAAATAAGAGCTCCATGTTTCCATTAGCGCCTTGTTGCAGTTCCACTTCAGTCTCTTGTG	1037	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.181	1.812	1.671	1.297	0.488	0.543
Raw	236.935	591.190	464.115	567.985	75.519	91.396

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54430.1	1595	8e-25	1414 - 1473	100	60 / 60	plus
Harvest35	U35_5929	1175	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_5929 1175 Hv_44K_v2
CGTCCCCGAAGCCCGTCGGCCCTTACCAGTACCCGCCCAACAACTCGTTCGCCCAGCGCC
AGGCTCAAGTCGCTCGTTTTCATCTCCTGAAGCAGCAGCAGCTGATGAAGCACCAGAGGG
AGCAGCAGCTGGCCATGGCTGCGGCCATGGCGTGGGGCTCCGCCGACGTCGGGCCGCTCG
GCCTGAACCCCTCGGCCTGGCCGCCGCTGCAGAATCCCCCGCACCACGCTCCTCCGTCCG
CGGCCGGCATGCGCGCCGTGTTCCTCACCCCGCCCGGAGCGAAGCGGGAGTGCACCGGCA
CCGGCGTGTTCATCCCCCGGCAGGCCGGCGCGCCCGCCGAGCCCAGGAAGAAACCAAGCT
GCTCGACGGTTCTTCTCCCGGCGCGCGTCGTGCAGGCTCTCAATCTCAACGTCGAGGACC
TCGGCGCCCGCCCGTGCTACCCCGGGACCTTCGTTCTTGATCACGACGCGCTGGTGAGCC
GGAGCAACGCGATGCAGGCGAGCCAGAAGCGCGAGCACAATGCCAATGCCAATGCCGATG
CCGCCGCCGCGCACTCGCCGCCGCTCGCCGTGGCCTGCGAGGTCAATCTCCCGCAGGAGT
GGACGTACTGAGATGCGTGTTGCCGCTCTCAAGCGTCGTTGGTCTCCCCCCGTTTTCATG
GATTACTATCTAATACTATTACTTATTTCTGTTATCATCGATGGTTAGCGCTAGGTAGAT
GTTAGCTAGAGGTAGGACGCGGTGGCAGTAGCATCAGCGTTAGGTGTTCTTTTGTGCGTG
GTGATATATTGGTTATTTTGGAGGATGGTTGGTGATGGACGGACGGACGCAGACGACCAA
CAGAGAGAAGAACGATGAAAAATCCGTGGCTTCCGTAGGTTGTTGTTGGGGGAAACAATA
AGCGGTTCCTACAAGAAAGAAAGAAGAAATCTGGGAGGTATGGTGCTGCCTGCTGGTAGT
TGTAAGGTGGACGATGATTGGGAAAATATCATCGGCTGTTTGGAAAGGTGTCATCGCTGT
AAGATATAAGGAAGAAAGAAATAAGAGCTCCATGTTTCCATTAGCGCCTTGTTGCAGTTC
CACTTCAGTCTCTTGTGTGTGCGTCCCTTTTGGCATCGCCCGGTTGCTTCGTGAATAAGG
AACCCCCCTTCTGTAAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63050.1	364	5e-66	protein\|expressed protein
Brachypodium v1_2	Bradi2g55010.1	351	4e-74
Arabidopsis v10	None