barSeed - Barley Seed Development Database

Probe CUST_24831_PI390587928

Source Contig U35_43079

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24831_PI390587928	Hv_44K_v2	GTGGTTGCCCATCTGAACTGTAGCTTCAATTCCATTCTACTTAAGTTCATTTATATTTGG	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16599.2	1219	3e-21	1003 - 1063	97	59 / 61	minus	ABC39287
JLOC1	JLOC1_11442.1	1203	2e-21	371 - 431	97	59 / 61	minus
Harvest21	ABC39287	548	3e-25	21 - 80	100	60 / 60	minus	ABC39287
Harvest35	U35_43079	548	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (548 bp)

>U35_43079 548 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACCAAATATAAATGAACTTAAGTAGAATGGAATTGAAGCTA
CAGTTCAGATGGGCAACCACAAAAGCCGCAAAAGAATAAAACTAGGAAGAGGCAACCAAT
TCAACCGGAAGATATCAATTTCAACAGTAAAATGAGCATAGGCAGATTAGTTCAAAGTTC
ACTTATTCATACTTGACCGTACTGGGACTCGATGATCCATGACTGTTTAAACGAAACCAA
CACATCTCACTGGGACTCGATGATCCATGAAACATGAAACCAGACACTGTAGAACTTGAC
ACAAACGAGACTGACACTTCACATGAGCAACAGGGGCCACCCACCAGAGTACCCAGGGCA
ATCACTGACCACCTCGGAGGCGGAGCACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGT
AGTCGGCAAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGT
CCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGC
TCTCAACC

Homology of Contig U35_43079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None