barSeed - Barley Seed Development Database

Probe CUST_24821_PI390587928

Source Contig U35_43084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24821_PI390587928	Hv_44K_v2	CTCTTCAATGATACAATCCGTGCCAACATAGCCTATGGTAAGGATGGGGAACTTACTGAG	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363190	4721	2e-24	4138 - 4197	100	60 / 60	plus	ABC20774 ABC25561
MLOC	MLOC_15396.4	3673	2e-24	2798 - 2857	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.5	3482	2e-24	2616 - 2675	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.6	1644	2e-24	937 - 996	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.1	2361	2e-24	1719 - 1778	100	60 / 60	plus	ABC20774 ABC25561
MLOC	MLOC_15396.7	1378	2e-24	504 - 563	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.2	2848	2e-24	1974 - 2033	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.3	2703	2e-24	1829 - 1888	100	60 / 60	plus	ABC20774
JLOC1	JLOC1_10558.1	2425	8e-25	1569 - 1628	100	60 / 60	plus
Harvest21	ABC39300	708	3e-25	615 - 674	100	60 / 60	plus
Harvest35	U35_43084	708	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_43084 708 Hv_44K_v2
GAAGAATATATGATCAGAAATGTGAGGCCTCAAGGAATCAAGGAGTCAGAACAGGAATAG
TTGGAGGCATTGGATTTGGTTTCTCATTCTTGATGTTGTACCTTACGTACGGTCTTTGTT
TCTATGTTGGAGCACAATTTGTGCGCCATGGCCAATCAAATTTTGGTGACGTTTTCAAGG
TTTTCTTTGCACTGGTTTTAGCAACCATTGGAGTATCTCAAACAAGTGCAATGGCCACCG
ATTCAACAAAAGCAAAAGATTCAGCTATTTCCATATTTGCTTTATTGGACCGAAAGTCTG
AAATAGACTCAAGCCGCAATGAGGGTTTGACATTAGACGAGGTCAAGGGCAACATCGATT
TCCAGCATGTCAGCTTCAAGTACCCAACTCGCCCAGATATTCAGATCTTCACTGACTTTA
CCCTGCACATTCCCTCTGGAAAGACTGTTGCCCTTGTTGGAGAGAGTGGTAGCGGCAAGT
CAACGGTAATTGGACTGTTGGAGCGATTCTACAATCCCGATTCAGGCACCATCTCATTGG
ATGGAGTGGAAATCAAGAGCTTAAACATTAACTGGTTGAGGGACCAAACAGGACTTGTGA
GCCAAGAGCCTGTACTCTTCAATGATACAATCCGTGCCAACATAGCCTATGGTAAGGATG
GGGAACTTACTGAGGAGGAGCTCATTGCAGCTGCAAAGGCATCCAATG

Homology of Contig U35_43084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50160.1	1275	1e-119	protein\|MDR-like ABC transporter, putative, expressed
Brachypodium v1_2	Bradi2g47400.1	1263	3e-136
Arabidopsis v10	AT4G18050.1	1236	2e-87	\| Symbols: PGP9 \| P-glycoprotein 9 \| chr4:10022205-10027280 FORWARD LENGTH=1236