barSeed - Barley Seed Development Database

Probe CUST_24815_PI390587928

Source Contig U35_43087

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24815_PI390587928	Hv_44K_v2	TGGACTTTTTAATGCTTGTCACAGCTTACGGAAAACTGGGGGATTTCAGCAAGGCGGAAA	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59531.2	2163	2e-24	532 - 591	100	60 / 60	plus	ABC25611
MLOC	MLOC_59531.1	1976	2e-24	541 - 600	100	60 / 60	plus	ABC25611
JLOC1	JLOC1_38744.2	2464	8e-25	523 - 582	100	60 / 60	plus
JLOC1	JLOC1_38744.1	2282	8e-25	549 - 608	100	60 / 60	plus
Harvest21	ABC39304	602	3e-25	523 - 582	100	60 / 60	plus
Harvest21	ABC18166	855	3e-25	173 - 232	100	60 / 60	plus
Harvest35	U35_43087	602	3e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_22465	855	3e-25	173 - 232	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_43087 602 Hv_44K_v2
GGCCTGCCGATAAGGCTCCCCCGCGCTAGCTGCTCCCACCGTTTGCTCCGGCGAGCGCCG
GCGATGGAGGCGGCGATGGGGACGCTCGGCTCGCAGTCCCCGCTCTCCTTCTCCTCCAGC
CTCTGCAACGCAAAGGCATCCTGTGGCTGGCCTGTTTACAACGTGAAGAAGGTCGAGGGC
AGTCAGCGGCTCGACGTGGTCTGCCATGGAATGCTGGCGCCCAGAAAGTTTGGCGCAAGA
AGAGAGAGGAGGAGGTCTTCAAGGACGCCGATGACGAGGCCAAGCAGAAGAGCTGGAGGA
AAATGATGAGTGAGATAGAGGAGTCTGGATCGGCCGTGTCTTCCATTCTCAAGACCCAGC
GGAACACGACGGGGGCGCTACCAAGGGACACTGTTCTTGGCACTCTTGTGCGGTTCAAAC
AGCTCAAAAAAATGGGATCTCGTCAGCGAGTGCCCTTCCTTCCTTTCTTTCTTCAGATTC
TTGAATGGCTTCGAACACAACATTGGTGGGACTTCAGCGAGATGGACTTTTTAATGCTTG
TCACAGCTTACGGAAAACTGGGGGATTTCAGCAAGGCGGAAAGGGTCCTCAAGTACATGA
AC

Homology of Contig U35_43087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09270.1	610	1e-52	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g14950.1	607	6e-56
Arabidopsis v10	None