barSeed - Barley Seed Development Database

Probe CUST_24809_PI390587928

Source Contig U35_43090

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24809_PI390587928	Hv_44K_v2	ATGAAGCTTGGGACCATTGAGATCCTGATGGGCGCCGGACTTGTGTGCCACTCATGGTTG	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371879	1746	2e-24	549 - 608	100	60 / 60	plus	ABC39310
MLOC	MLOC_58202.1	1834	2e-24	1183 - 1242	100	60 / 60	minus	ABC39310
JLOC1	JLOC1_37791.1	1700	8e-25	503 - 562	100	60 / 60	plus
Harvest21	ABC39309	515	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_43090	515	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_43090 515 Hv_44K_v2
GCCGATCTGGTTGACCTATAGTTCCCTTGCGGAGGCGGCGTGAGGGCATGTCGAGCCCCT
CCGGCGACGGGGGGCGCCGCATTAGCGGCAGCCCCACGGCCGGCGGCAGCAGGGAGGAGC
GGGGCGCGTTCCTGCCCGTCGCCGATATCAGGCGCATCACGAGGAAGGCTACCCCGCCCA
ACGGGGAGATCGACGAGGAGGCCGTTCAGGAGCTAGTCTCCGAGGCGAGGGGCGACAGAT
CCAAGAGGGCGAAGCGGGAGGCCATGGCCGGCGACGACCTGCTGACCGAAATGGCGAAGC
AGGGGTTTCAGGCCTACCCCCACAAGAACAGAGTGGAGCTACCTTGCACGATGAAGGTGG
AGCCAAAACCCTTGCCTGTGTCTGATGTCAGGGATTGGTCTGAGCTCCCACTCGATGCGC
TTTCTGCAATCTTCATGAAGCTTGGGACCATTGAGATCCTGATGGGCGCCGGACTTGTGT
GCCACTCATGGTTGGTGGCAGCCAAGCCCCCTGAG

Homology of Contig U35_43090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None