barSeed - Barley Seed Development Database

Probe CUST_24804_PI390587928

Source Contig U35_49559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24804_PI390587928	Hv_44K_v2	TTGGATGGTCGTTTTGTATTGAGAGAGGCATGCGGTGAAATGTGAATCGAAGCAATTTAT	469	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16227.1	1173	2e-24	1092 - 1151	100	60 / 60	plus	None
JLOC1	JLOC1_11165.3	1172	8e-25	1064 - 1123	100	60 / 60	plus
JLOC1	JLOC1_11165.2	1123	8e-25	1015 - 1074	100	60 / 60	plus
JLOC1	JLOC1_11165.1	1119	8e-25	1011 - 1070	100	60 / 60	plus
Harvest21	ABC51347	532	3e-25	470 - 529	100	60 / 60	plus
Harvest35	U35_49559	532	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_49559 532 Hv_44K_v2
TTGACAACTTCAAATATGATGATCAAGAGCAGCACCAATCAACTGGTTCTTATTGATTTT
GGTCTGAGCTTTACATCAACTATTCCCGAGGACAAGGCAGTGGACCTATATGTTCTTGAG
AGAGCCTTGATTTCAATGCATTCTTCATGTGGTGATGTGATGGAGAAGATCCTCGCAGCG
TACCGAAAAGCTTCAAGGCAGTGGTGCGCCACTACGAACAAGCTAGCTCAAGTCAGGCAA
CGGGGCAGAAAGCGAACAATGGTCGGGTAAAACTTGACCCGGAGTTACTGAATGCTACAA
ATTTGAACCTGCAACACCATCCATTGTGTTAGTTTGCACCATAGCGACTCAGCGGAATTG
GCTCTTGTAGAATTGAAATGGACGTCAAGTGAATCATTTGTAACAGTACTTGGTTGTACT
TCCGTTAGGAATCATATACTGTATCTCCTAACTCTTTAACTCTACTTTGTTGGATGGTCG
TTTTGTATTGAGAGAGGCATGCGGTGAAATGTGAATCGAAGCAATTTATTAA

Homology of Contig U35_49559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None