barSeed - Barley Seed Development Database

Probe CUST_247_PI390587928

Source Contig U35_20073

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_247_PI390587928	Hv_44K_v2	CAGGCACTAAGAAATTGGTCTCCTTACCAATCAAAAGCTACAAGAAGGACCGGAAGTTGC	908	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3448.1	1548	2e-24	933 - 992	100	60 / 60	minus	ABC13047 ABC24314
JLOC1	JLOC1_2071.1	1566	8e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC13047	1142	3e-25	909 - 968	100	60 / 60	plus	ABC13047
Harvest35	U35_20073	1142	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_20073 1142 Hv_44K_v2
TGTGTACCAACAAGAATGCAAGCCTGCTGTTTGCAGCTTGAATTCTGATGAATCGGGCAA
TCTGAAAGGCAAGATTCTTATTCATGATATATACGTTAAGTGGCGCATGTATGCTGGTGA
TGACTGGCCATTGGCTCACAATGATTCAACTAGCCACCTATGCTCAAATGGAAGAGATAG
GAGTTCTTCTTTAGAATTCATCGTGTCAGGACTCGGTGTGCAATTTGATATGTATCCAGA
TGGGGCAGTTTCTGTTTCTAGGTTATCCATCTCCGCTCAGGATCTAAATCTTTGTGACCA
AAATACGCATGCTCCATGGAAAATGGTTCTCGGATGCTACAGCTCAAAGGATTACCCAAG
AGAATCTTGCTCGACTGCATTCAAGTTAGAACTAGAGTCTGTAAGACCTGAACCACAGGC
TCCTCTAGAAGACTACAGGTTATGCCTCGAGATTTTGCCTCTTCAATTGCATCTTGATCA
AGGGCAACTGAACTTCCTCATCAGTTTCTTCCAGAATGACTCAATTAACAACAACCCTCA
TGTGCCTTGCGAAAATGAGATTGTTGGTATGGACAGCACAACCTACGGAAGCACTACAAT
TGTGGATGAAGCATTACTTCCTTTTTTCCAGAAATTCGATGTGAAGCCTCTGGTTCTGCA
TATTAATTATATTCCTCGTCAGTTTGATCCTATTGCACTAGGTAAAGGAAATTATGCAGA
GCTTCTCAACATCCTTCCATGGAAGGGAATCGATTTAAAGCTTAAGAATGTTTCTGCAAT
GGGTGTTTATGGGTGGAATAGTATATGTGAAACAGTAGCTGCAGAGTGGCTGGAGGACAT
CTCCAAGAATCAGGTCCATAAAGTGTTAAAAGGTCTTCCTCCTATAAAGTCATTAGTTGC
CGTTGGTTCAGGCACTAAGAAATTGGTCTCCTTACCAATCAAAAGCTACAAGAAGGACCG
GAAGTTGCTCAAGGGAATGCAAAGAGGTGCTGTTGCTTTCATCAGAAGTGTATCCATCGA
AGCTGTAGGCCTTGGTGTCCATTTGGCAGCGGGAGCTCATGATATGCTTTTGAAGACAGA
GCGTGCCCTTACCGCTGTTCCACCGCCTTTAACCTCACGTGAAGCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_20073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15700.1	1920	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g43830.2	1949	0.0
Arabidopsis v10	AT3G19190.1	1839	1e-71	\| Symbols: ATATG2, ATG2 \| autophagy 2 \| chr3:6639879-6648274 FORWARD LENGTH=1839