- Probe CUST_24797_PI390587928
- Source Contig U35_49561
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24797_PI390587928 | Hv_44K_v2 | TCACTGTGGTGTACTCCCTCCGATGTTATTTTGCAAAACGGTTTTATATTGTGGGATACC | 189 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.746 | 1.740 | 1.040 | 0.893 | 0.445 | 0.514 |
| Raw | 2522.947 | 3789.013 | 2078.563 | 2778.012 | 493.254 | 618.457 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375881 | 2541 | 2e-24 | 2469 - 2528 | 100 | 60 / 60 | plus | ABC51352 |
| MLOC | MLOC_61259.1 | 2007 | 2e-24 | 1660 - 1719 | 100 | 60 / 60 | plus | ABC51352 |
| MLOC | MLOC_61259.5 | 705 | 9e-22 | 651 - 705 | 100 | 55 / 55 | plus | ABC51352 |
| JLOC1 | JLOC1_40029.4 | 981 | 8e-25 | 777 - 836 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40029.2 | 1643 | 8e-25 | 1439 - 1498 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51352 | 268 | 3e-25 | 190 - 249 | 100 | 60 / 60 | plus | ABC51352 |
| Harvest35 | U35_49561 | 268 | 3e-25 | 190 - 249 | 100 | 60 / 60 | plus |
Contig Sequence (268 bp)
>U35_49561 268 Hv_44K_v2 AGGATTAGGGCAAGTGCTAGTCGGAACTAAGGATTTGCATTTGGTCAAGAGCGGTGGAAG AAGAGTGTTTGCAGATAGATGCAAGGGGTGGTGGCAGCCAGTCATATTTTGGGGTTGGGA TGTAGTAAAACCAACTAAAACTGCCTGATGCAGAGCAAGTGGAACTTTATTATATGTGTC GTCAGTCTGTCACTGTGGTGTACTCCCTCCGATGTTATTTTGCAAAACGGTTTTATATTG TGGGATACCNNAAAAAAAAAAAAAAAAA
Homology of Contig U35_49561 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |