barSeed - Barley Seed Development Database

Probe CUST_24795_PI390587928

Source Contig U35_49564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24795_PI390587928	Hv_44K_v2	GATGTGTTTACAGAACATTCGTAACATGGTTGTTCTCATGGTGTCCAAATAATTCAGAGT	369	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.038	1.333	1.534	1.184	0.498	0.555
Raw	223.009	437.240	451.510	547.410	81.440	97.707

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249242.1	2331	2e-24	2261 - 2320	100	60 / 60	plus	None
MLOC	MLOC_45064.11	2935	2e-24	1163 - 1222	100	60 / 60	minus	None
MLOC	MLOC_45064.3	2912	2e-24	1227 - 1286	100	60 / 60	minus	None
MLOC	MLOC_45064.2	2500	2e-24	1227 - 1286	100	60 / 60	minus	None
MLOC	MLOC_45064.1	2457	2e-24	1227 - 1286	100	60 / 60	minus	None
MLOC	MLOC_45064.4	3323	2e-24	1434 - 1493	100	60 / 60	minus	None
MLOC	MLOC_45064.5	3194	2e-24	1434 - 1493	100	60 / 60	minus	None
MLOC	MLOC_45064.6	3120	2e-24	1434 - 1493	100	60 / 60	minus	None
MLOC	MLOC_45064.13	1061	2e-24	2 - 61	100	60 / 60	minus	None
MLOC	MLOC_45064.10	3081	2e-24	1448 - 1507	100	60 / 60	minus	None
MLOC	MLOC_45064.12	2566	2e-24	902 - 961	100	60 / 60	minus	None
MLOC	MLOC_45064.7	3152	2e-24	1381 - 1440	100	60 / 60	minus	None
JLOC1	JLOC1_29246.5	2819	8e-25	1533 - 1592	100	60 / 60	plus
JLOC1	JLOC1_29246.4	3099	8e-25	1536 - 1595	100	60 / 60	plus
JLOC1	JLOC1_29246.3	2722	8e-25	1536 - 1595	100	60 / 60	plus
JLOC1	JLOC1_29246.2	2742	8e-25	1556 - 1615	100	60 / 60	plus
JLOC1	JLOC1_29246.1	3080	8e-25	1517 - 1576	100	60 / 60	plus
Harvest21	ABC51355	433	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_49564	433	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_49564 433 Hv_44K_v2
AAACCAACACTCACAGATCAGAACAAAGCCATGGAGGTGACAATTAGTAAAGAGTACCTT
AACAGCGTTCACCAGTGGTGCAAGTGGTACATTTTGAAGAAACCGAAGAAGACTTTAGGG
CCACTATATACGAAGAAGAATGAGTTTAGATCTAAACTCCTTAAAGTTGTGAGCCACATG
CTGAAAGTCGATAAGTTTGAAGCTGCTTGCGATATGCTACTGGATAAAAATACAATTTAA
GAAATCATCCGTGCATGACCCAGTAATATGAAACGCTCGTTTAGCCTATTTTTGGATCAT
CCATATGCAAGTTGCATGTTGCATATTCTGTTACGAGGTTAGAGGTGAATTTCTTCACTG
TTGTCTGCTGATGTGTTTACAGAACATTCGTAACATGGTTGTTCTCATGGTGTCCAAATA
ATTCAGAGTTATT

Homology of Contig U35_49564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None