- Probe CUST_24777_PI390587928
- Source Contig U35_49589
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24777_PI390587928 | Hv_44K_v2 | CACCTTGCACTGCTATGTGTGTGATACTAGTGTTTGATGTAAAAGTGAACTCAAATTGAG | 486 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.030 | 1.394 | 1.042 | 1.201 | 0.506 | 0.538 |
| Raw | 1126.462 | 1226.902 | 788.100 | 1453.536 | 209.613 | 246.286 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371783 | 2074 | 2e-24 | 1991 - 2050 | 100 | 60 / 60 | plus | ABC18157 |
| MLOC | MLOC_63214.1 | 188 | 2e-24 | 28 - 87 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_41402.1 | 1612 | 8e-25 | 1444 - 1503 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51400 | 549 | 3e-25 | 487 - 546 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49589 | 549 | 3e-25 | 487 - 546 | 100 | 60 / 60 | plus |
Contig Sequence (549 bp)
>U35_49589 549 Hv_44K_v2 GATCGATATTGTATAGACAATGGTGCGATGATTGCATACACTGGTTTACTGGCATATGCA CATGGTGTGATCACACCCCTGGAGGATTCGACATTTACTCAAAGGTTCCGAACTGATGAA GTTCATGCAATTTGGAGGGAGTATTTGAAGGTCTAGGTTTGCCCCAAGTTAAAACCCTGT CAAGTTTGACCAAGTCTATAAAAAAGTGAACCAACATCTACAACGCCAAATTTACTTTAC TAGATTCATCATAAATTATATTTTCATACTATACATATTTGATGTTGTAGATATTGGTAA ATTTTTCTATAAACTTTATCAAACTTGGAAGAGTTTGACTTACACAAAGCTAGAACTTTT GAGTAATTTGGGACAGATGGACTAACCTTCCACTCCTATGTGTGATACTAGTATTTGATG TAAACGTGAACTTAAAGGTTGAGAAAGTACTTTATGTTGGCAGCACCGTTCCCATTTTGA AAGATGCACCTTGCACTGCTATGTGTGTGATACTAGTGTTTGATGTAAAAGTGAACTCAA ATTGAGAAA
Homology of Contig U35_49589 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |