barSeed - Barley Seed Development Database

Probe CUST_2476_PI390587928

Source Contig U35_38255

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2476_PI390587928	Hv_44K_v2	CTATTTCTGGAACTAAATCCACTATCGCTGCACCTCAAGCTGTGGATCTGCTCGATAGTT	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1297.3	1556	2e-24	1039 - 1098	100	60 / 60	plus	ABC20393
MLOC	MLOC_1297.2	2146	2e-24	1477 - 1536	100	60 / 60	plus	ABC20393
MLOC	MLOC_1297.1	2374	2e-24	1617 - 1676	100	60 / 60	plus	ABC20393
JLOC1	JLOC1_795.1	2264	8e-25	1502 - 1561	100	60 / 60	plus
Harvest21	ABC34145	628	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_38255	628	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_38255 628 Hv_44K_v2
GGCTTGAACTACAGCAAAGATCAATTGAATTCGGTTCCATTATACAAAGACATCAGTCTA
TCAGGTCATCTTTGCTTGAGCGTATGCCTGTACTGGATGAAGCTACTTATCTTGTGAAGA
GGGCTAGTGCTACACAAGCAACTATTCCAGCATATAAGCCTGCAGCAGTCACTCCTGGAG
GCCTTAAGCTTCCTAATGGTGTAGCAAAACCTGCTGCAGCTCCATTAGTTGATTTGCTTG
ATTTAAGTTCTGATGATGCACCAGTCACTACCACTGCTTCTGCTACTGCAGCACCTAGTG
ATTTTCTCCAAGACCTTTTGGGTATTGGTGGGACAAATTTATCAACTGCAGGAGCACCTT
CATCTGCAAGCACAGATATTCTAATGGATCTTCTATCCATGGGATCGTCTCCTTCACAGA
ATGGTCTGCCAGCTCCAGGTTTGAGTTTTCCTGCCCAAGAGAAAAAACCCGTTTCTGCTA
CACCTCAAGTTGGTTCTCTTGTACCTGAACCTATGGACCTACTCGGCAGTTTGTCATCAA
GTGCATCTATTTCTGGAACTAAATCCACTATCGCTGCACCTCAAGCTGTGGATCTGCTCG
ATAGTTTGTCACCAAGTACATCCGTTTC

Homology of Contig U35_38255 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g54597.1	886	4e-60
Arabidopsis v10	None