barSeed - Barley Seed Development Database

Probe CUST_24767_PI390587928

Source Contig U35_8504

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24767_PI390587928	Hv_44K_v2	CAAAAAGAGTGCAATACAAATAGAACGCCATGCGTGTAAGGATTTATCCTACCCGTTGCA	741	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50214.1	1074	2e-24	617 - 676	100	60 / 60	plus	ABC16930 ABC21092
Harvest21	ABC21092	817	3e-25	742 - 801	100	60 / 60	plus	ABC21092
Harvest35	U35_8504	817	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (817 bp)

>U35_8504 817 Hv_44K_v2
CCTTAGTATGGTCATCATTTTCTCATTTATATCCTTCATCTTGGTAAGGATGCGATAGCT
TGCCCCTCTGCATGGATTTGTTTTTTCCAGCGCTCGTTTCTTTTCTCTGTTAACCAGATC
TCGTTCTTTTATTTTGCGGGTGTCTAACCATCCTTCTCCGGAGGTCCAAGACCGGGCTGA
TGGTCAACCCGCCGGAGCTCATGGCGCCCTACACCTCCCAGCCAGTGGCCATGCCGGAGA
ACTGCCACTCCATGTTCATCACCTTCTCCAAGGAAAATGCCCTCCACCGCGAGGAGATCT
TCCAGTACTTCAGGCAATCATCTTGCTGTATTTTACAATCGCCGGTTAATTAGCCGCAGC
TGACATTTGGGGTGACAGACATGATGATGATGGATAGCAGCAAAAGGAAGAGTGGCGAGG
CTGCCACCATCACGGCAGATCAGGTGTGCCCAAGCAACAACAACAAGAGGAACAAGGCCC
TTCTACTATCTCTTTGTACACTATTGCTTTCTAATGAAATGATGTTGGAGGTGCTACTTC
GGCTCCCTGTCAAATCCATTCTCCGCTTCTGGTCCGTCTGCCGCGCTTGGGCTGCTCTTT
TGTCCTCCAAGGATTGACACCAAAATTCAAAACATTGCCCATAGTGTCGAAATTCAAGAT
GGATCACTGTTTCTACTATAGACGACGTGAACGATTAGGATTGATCACGTTTGTTGTTAA
TAGATGGACATTGTGGCCGTACAAAAAGAGTGCAATACAAATAGAACGCCATGCGTGTAA
GGATTTATCCTACCCGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None