barSeed - Barley Seed Development Database

Probe CUST_24766_PI390587928

Source Contig U35_8505

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24766_PI390587928	Hv_44K_v2	TGGTGTTATTAAGGTGCTTCTTTTGATGAGTGCAATTTGCGTTTTCATGGTGGCCTCAAA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67497.1	2473	3e-22	26 - 84	98	58 / 59	minus	ABC39302
JLOC1	JLOC1_44574.1	2469	1e-22	2251 - 2309	98	58 / 59	plus
Harvest21	ABC39302	408	3e-25	15 - 74	100	60 / 60	minus	ABC39302
Harvest35	U35_8505	706	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_8505 706 Hv_44K_v2
CTCGACCAGATTAGCACGTCGCATGAGGATGAAAGGATTGGAGTTCAATTTATCAAGAAT
GCTTTGAAGGCCCCCCTGATGACCATAGCTGCAAATGCTGGTGTTGATGGTGCTATAGTT
ATTGGGAAGCTACTGGAACAAGACAATCTTAGTNTGGGCTATGATGCAGCAAAAGGGGAG
TATGTTGACATGATCAAGGCTGGTATCATCGACCCTGTGAAGGTGATCCGAACTGCACTT
CAAGATGCGGCAAGCGTTTCTCTGCTGATGACAACCACAGAGGCCGCAGTCGCTGAGCTC
CCGTCGACAAAGGCCAGAATCGCCAGTCGAATGCCGGACATGAGCGGAATGGGCTTCTGA
GGACAGTGCAGCATGCTGTCTCATTTACCTGTTTTTGGTTAAAGACATGAGAAACGTAAC
TTCCCCGGCCTATACATGAATGGAAATTCCCCTCCCTATCAAGTGAGATGAGAGGTGCAA
AGCTGGCACCTATTTTGGTTTTCGAAAAACTCACGGTTCAGTGCTGATGTAACCTTAACT
AGATTTAGAGCCCTTTCATTTTGGGTCGAAATTCGAGTAGGCTCAGACAAGACAAGCATT
ATCTTGGCTTTGAATGTTAACTGGGCAACGTCTGGTGTTATTAAGGTGCTTCTTTTGATG
AGTGCAATTTGCGTTTTCATGGTGGCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46290.1	582	1e-57	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi2g18260.1	577	3e-62
Arabidopsis v10	None