barSeed - Barley Seed Development Database

Probe CUST_24755_PI390587928

Source Contig U35_8517

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24755_PI390587928	Hv_44K_v2	GAGATTGACAGTAGAGTATTTCAAATCTGCATCTCTTCAGAGGAAACTATTGAATAAGCA	654	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4908.4	1844	2e-24	359 - 418	100	60 / 60	plus	ABC49987
MLOC	MLOC_4908.2	2183	2e-24	842 - 901	100	60 / 60	plus	ABC49987
MLOC	MLOC_4908.3	2000	2e-24	717 - 776	100	60 / 60	plus	ABC49987
MLOC	MLOC_4908.1	2700	2e-24	1368 - 1427	100	60 / 60	plus	ABC49987
JLOC1	JLOC1_3114.1	4876	8e-25	1218 - 1277	100	60 / 60	plus
Harvest21	ABC17279	732	3e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_8517	732	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_8517 732 Hv_44K_v2
GGACAAATCTAGTAGATCAAAGGCCAGGAATCTTGCTGCCAAATCAAAGATCAAGGATGC
TTTCTCCTTTGTTGAGCTAAAAAATGACACCTCAAAAAAGAGAGGTTCTCATACACAGAG
AAGATATCAACTGAAGGACTTATCATGGAAATCAAGGGATACTACTGCTGATGGGAAGGA
GAGCCAAGGTCAGGAAGTAGCACAAGCGGAGAATCCCAAGTCCTGTGAACTTGAATATGG
AAGCTACTGCCTCTGGTCTGTTGAGCATAAGGAAGATATGAAAGATGCTATTGTGAAGAG
GCTTAAAGATCAACTTTTTATGGCCAGAGCCCATTATCCTAGTATTGCAAAACTGAAGCA
GCAGGAAAGATTTACACGTGAGTTGAAGCAACATATCCAAGAACACGAACGCATGCTCAG
TGACGCCATTGCAGATTCTGATCTTCCACCATTTTTCGCAAAGAAGCTAGAGAAAATGGA
GGGCGCAATTGAGAGAATCAAGTCTTGTGAAGTAGGCTGCTCGAATGTTGAACGGAAACT
TAGGCAGCTACTCGATCTAACTGAAGATGAAGCTTATTTCCATACAAGGCAGAGTGCATT
CCTCTATCATCTCGGGGTCCAGACTATGCCAAAAACTCACCATTGCTTGAACATGAGATT
GACAGTAGAGTATTTCAAATCTGCATCTCTTCAGAGGAAACTATTGAATAAGCANAAACT
TGAAAACCCTAC

Homology of Contig U35_8517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g03160.1	643	4e-128	protein\|glycosyl transferase, family 8, putative, expressed
Brachypodium v1_2	Bradi3g61120.1	565	2e-134
Arabidopsis v10	AT2G38650.1	619	1e-65	\| Symbols: GAUT7, LGT7 \| galacturonosyltransferase 7 \| chr2:16161856-16165523 REVERSE LENGTH=619