- Probe CUST_24739_PI390587928
- Source Contig U35_8535
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24739_PI390587928 | Hv_44K_v2 | GTGGGACGAGAAGCGCGCCCAATGGCTCCGCGCGCACCCGGAGCTGGCCGGCGCCGGCGA | 344 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.126 | 0.267 | 1.180 | 1.909 | 1.136 | 1.557 |
| Raw | 5.238 | 15.907 | 78.579 | 191.487 | 43.232 | 62.972 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374683 | 1581 | 2e-24 | 343 - 402 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37070.1 | 815 | 2e-24 | 251 - 310 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_23955.1 | 640 | 8e-25 | 251 - 310 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_8535 | 444 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus |
Contig Sequence (444 bp)
>U35_8535 444 Hv_44K_v2 CTCACGATGCCAGTCAGCCAGCCAGTACGCGCCATGCATGCCACCGCCGCGCCTGCGGTG CGCTAGAAGTACGGCGCCCCGGCACGGCCAACGGCACCGCACCGGGCTGCTCTGCTTGGC ATTGGCACCGGCATGGCGCGCTCCCTCCTCGGCGACGCGCTCCTCTTCTCCGCCGGCGCC GCGGTGGCCGCCGTGCTGCTGCTGACGCTGTCCTCGCCCTTCACTCCGCCCGCCGTCCTG CTGGGACGACGGTCGTCGTCGTCCGCTGCTGCTGGTGGTGGTGATCGGCGGACCTTCTAC GACGACCCGGAGGTGACGTACACCGTGGACCGTCCCATCACCGGGTGGGACGAGAAGCGC GCCCAATGGCTCCGCGCGCACCCGGAGCTGGCCGGCGCCGGCGAGGGACGCGTCCTGATG GTGTCCGGCTCGCAGCCGGCGCCG
Homology of Contig U35_8535 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |